Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   KHN79_RS11110 Genome accession   NZ_HG992749
Coordinates   2464539..2465057 (-) Length   172 a.a.
NCBI ID   WP_182008855.1    Uniprot ID   -
Organism   Vibrio sp. B1FLJ16     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2459539..2470057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN79_RS11085 (ACOMICROBIO_LOCUS1634) rimM 2459646..2460194 (-) 549 WP_182008851.1 ribosome maturation factor RimM -
  KHN79_RS11090 (ACOMICROBIO_LOCUS1635) rpsP 2460224..2460472 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  KHN79_RS11095 (ACOMICROBIO_LOCUS1636) ffh 2460683..2462065 (-) 1383 WP_182008852.1 signal recognition particle protein -
  KHN79_RS11100 (ACOMICROBIO_FLGHMIGD_02248) - 2462278..2463072 (+) 795 WP_182008853.1 inner membrane protein YpjD -
  KHN79_RS11105 (ACOMICROBIO_LOCUS1637) - 2463189..2464466 (+) 1278 WP_182008854.1 CNNM domain-containing protein -
  KHN79_RS11110 (ACOMICROBIO_LOCUS1638) luxS 2464539..2465057 (-) 519 WP_182008855.1 S-ribosylhomocysteine lyase Regulator
  KHN79_RS11115 (ACOMICROBIO_FLGHMIGD_02251) - 2465134..2465739 (-) 606 WP_182008900.1 hypothetical protein -
  KHN79_RS11120 (ACOMICROBIO_LOCUS1639) gshA 2465753..2467318 (-) 1566 WP_182008856.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19050.76 Da        Isoelectric Point: 4.7221

>NTDB_id=1112440 KHN79_RS11110 WP_182008855.1 2464539..2465057(-) (luxS) [Vibrio sp. B1FLJ16]
MPLLDSFTVDHTRMSAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1112440 KHN79_RS11110 WP_182008855.1 2464539..2465057(-) (luxS) [Vibrio sp. B1FLJ16]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACACGTATGAGCGCACCAGCGGTGCGAGTTGCGAAAACCATGCAAAC
CCCAAAAGGGGACACGATTACAGTGTTTGATTTGCGCTTTACGGCACCAAATAAAGATATTCTGTCGGAGAAAGGTATTC
ATACATTAGAGCACCTGTATGCGGGCTTTATGCGTAATCACCTAAATGGCGATAGTGTAGAGATCATTGATATCTCTCCG
ATGGGATGTCGTACCGGTTTTTACATGAGTCTGATTGGTACGCCTTCAGAGCAGCAAGTCGCTGATGCCTGGATTGCTTC
GATGGAAGATGTGCTGAAAGTAGAAAGCCAGAATAAAATTCCAGAGCTTAATGAATACCAGTGTGGTACGGCTGCGATGC
ACTCACTAGATGAAGCCAAGCAAATTGCGAAAAATATTCTTGATGCAGGTGTGTCAGTGAATAAAAACGATGAATTGGCT
TTGCCAGAATCAATGCTGAAAGAGCTACGCATCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment