Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   KJB05_RS24115 Genome accession   NZ_HG992743
Coordinates   1278857..1280158 (+) Length   433 a.a.
NCBI ID   WP_078609696.1    Uniprot ID   -
Organism   Vibrio sp. B1ASS3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1273857..1285158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJB05_RS24105 (ACOMICROBIO_LOCUS4522) - 1276313..1277299 (+) 987 WP_208446295.1 peptidoglycan DD-metalloendopeptidase family protein -
  KJB05_RS24110 (ACOMICROBIO_NCLOACGD_04922) ylqF 1277621..1278565 (+) 945 WP_009704187.1 ribosome biogenesis GTPase YlqF -
  KJB05_RS24115 (ACOMICROBIO_LOCUS4523) cqsA 1278857..1280158 (+) 1302 WP_078609696.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  KJB05_RS24120 (ACOMICROBIO_LOCUS4524) - 1280315..1282360 (-) 2046 WP_032801937.1 hybrid sensor histidine kinase/response regulator -
  KJB05_RS24125 (ACOMICROBIO_NCLOACGD_04925) - 1282683..1283270 (+) 588 WP_208446296.1 HAD family phosphatase -
  KJB05_RS24130 (ACOMICROBIO_LOCUS4526) - 1283317..1284851 (+) 1535 WP_208446524.1 IS3 family transposase -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 48787.70 Da        Isoelectric Point: 6.3400

>NTDB_id=1112413 KJB05_RS24115 WP_078609696.1 1278857..1280158(+) (cqsA) [Vibrio sp. B1ASS3]
MPSLQAHANLCNLANDTSLILVKLYNCQRWRFSVLRRELIMSDKLKTKRLPSFVEERLDFYIQDLIEQNENQKHLVLGKR
PQPEAVVMQSNDYLSLSHNQQIQKAHRDAISEHDDNVVMSAIFLQDDDSKPAFETQLADYVGMGSCLLSQSGWAANIGLL
QTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMSHLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFD
CALVVDESHSLGTHGPNGSGLVKALELTDQVDFITVSLAKTFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEVIRL
EKTLEVIKDADDKRTMLFNRAKELRTGLKQIGFNIRSESQIIALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNI
IRFSINADMTSRDIDHVLTACQEAYNHPELEFV

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=1112413 KJB05_RS24115 WP_078609696.1 1278857..1280158(+) (cqsA) [Vibrio sp. B1ASS3]
ATGCCGAGTTTGCAGGCGCACGCAAACTTATGCAACTTGGCTAATGACACCTCACTCATATTAGTCAAACTATATAACTG
TCAGCGCTGGCGTTTTTCTGTATTACGAAGAGAACTTATTATGAGTGATAAACTGAAAACGAAACGACTTCCTTCTTTTG
TTGAGGAACGCCTGGACTTTTATATTCAAGATCTGATTGAACAGAACGAGAACCAAAAGCACTTGGTATTAGGGAAACGA
CCGCAACCCGAAGCTGTGGTCATGCAGAGTAACGATTACTTATCGCTATCTCATAACCAACAGATTCAAAAAGCTCACCG
AGATGCGATATCTGAGCATGATGATAACGTCGTTATGTCTGCGATTTTCTTGCAAGATGATGATTCGAAGCCTGCATTTG
AAACGCAGCTTGCGGATTACGTCGGCATGGGGAGTTGCTTGCTTTCCCAATCGGGATGGGCGGCGAATATAGGATTGTTG
CAGACCATTTGTCCACCTGAAACGCCGGTCTATATCGACTTCTTTGCGCATATGTCATTGTGGGAAGGTATTAGGGCCGC
AGGAGCACAAGCGCATCCGTTCATGCACAACAACATGAGCCACTTGCGCAAGCAGATCCAGCGTCATGGCTCAGGTGTTA
TCGTGGTAGATTCGGTCTATAGCACGATAGGCACGATCGCCCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGAT
TGTGCTTTAGTGGTGGATGAATCCCACTCGTTAGGAACACACGGGCCTAACGGCTCTGGCTTGGTAAAAGCGCTGGAACT
CACTGATCAAGTAGATTTCATTACTGTCAGTCTGGCAAAAACCTTTGCTTATCGAGCAGGAGCGATTCTCGGCCCAGAAA
AACTGGCACGAACGTTGCCATTCGTTGCGTTCCCGGCCATTTTTAGTTCAACGGTTCTGCCACAAGAAGTAATTCGACTA
GAAAAAACGCTCGAAGTGATTAAAGACGCCGATGATAAACGAACTATGTTGTTCAATCGCGCTAAAGAGCTCAGAACGGG
CCTTAAGCAAATTGGTTTCAATATCCGCAGCGAATCACAGATTATCGCGTTAGAGTGCGGTAGCGAGCGTAATACCGAGC
GTGTACGTGACTTCTTGGAAGAACGTAATGTCTTTGGCGCTGTATTTTGTCGCCCGGCAACGGGAAAGAATAAAAACATT
ATTCGATTCTCAATCAACGCCGACATGACGTCTCGTGACATTGACCATGTGCTGACAGCATGTCAGGAAGCATATAACCA
TCCAGAACTAGAGTTTGTTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(86-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.216

89.607

0.513

Multiple sequence alignment