Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KJB05_RS10600 Genome accession   NZ_HG992742
Coordinates   2305154..2306575 (+) Length   473 a.a.
NCBI ID   WP_208445441.1    Uniprot ID   -
Organism   Vibrio sp. B1ASS3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2300154..2311575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJB05_RS10580 (ACOMICROBIO_NCLOACGD_02126) - 2300536..2301147 (-) 612 WP_017190319.1 flavin reductase family protein -
  KJB05_RS10585 (ACOMICROBIO_LOCUS1392) - 2301823..2302518 (+) 696 WP_208445438.1 NAD(P)H-binding protein -
  KJB05_RS10590 (ACOMICROBIO_LOCUS1393) - 2302711..2304084 (+) 1374 WP_208445439.1 L-cystine transporter -
  KJB05_RS10595 (ACOMICROBIO_NCLOACGD_02129) - 2304311..2304991 (+) 681 WP_208445440.1 DUF1826 domain-containing protein -
  KJB05_RS10600 (ACOMICROBIO_LOCUS1394) sbcB 2305154..2306575 (+) 1422 WP_208445441.1 exodeoxyribonuclease I Machinery gene
  KJB05_RS10605 (ACOMICROBIO_NCLOACGD_02131) - 2306634..2307008 (+) 375 WP_005439820.1 CidA/LrgA family protein -
  KJB05_RS10610 (ACOMICROBIO_LOCUS1395) - 2307010..2307687 (+) 678 WP_009705896.1 LrgB family protein -
  KJB05_RS10615 (ACOMICROBIO_LOCUS1396) cdd 2307953..2308840 (+) 888 WP_208445442.1 cytidine deaminase -
  KJB05_RS10620 (ACOMICROBIO_LOCUS1397) purT 2308988..2310163 (+) 1176 WP_208445443.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  KJB05_RS10625 (ACOMICROBIO_LOCUS1398) - 2310242..2310892 (-) 651 WP_208445444.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54571.86 Da        Isoelectric Point: 4.9293

>NTDB_id=1112396 KJB05_RS10600 WP_208445441.1 2305154..2306575(+) (sbcB) [Vibrio sp. B1ASS3]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFYSMRNKRKLNELVDIVNMTPLMHVSSMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKREELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1112396 KJB05_RS10600 WP_208445441.1 2305154..2306575(+) (sbcB) [Vibrio sp. B1ASS3]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGTCCAAG
CCAGTTCGCAGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGCCCACCTGCTG
ATTATCTCCCTTCACCAGAAGCCGCTTTGATCACTGGTATTACGCCACAAAAAGCCATGCAAGAAGGCCTACCTGAGCCA
GAGTTTATCGCTAAGATCCACGCCGAGCTTTCTAAACCAAACACAACGAGCCTTGGTTACAACAGCATCCGTTTCGATGA
TGAAGTCACTCGTTACACTTGTTACCGCAACTTTATCGACCCGTATGCGTGGAGCTGGCAAAACGGTAACTCGCGCTGGG
ATTTGCTCGATGTGATGCGAGCGTGTCATGCCCTTCGTCCTGAAGGTGTGGAATGGCCGGAGAATGATGAAGGCTTTACG
AGTTTCAAGCTTGAGCATTTATCAGTGGCTAACGGTATTGAACACAGCAATGCTCACGATGCGATGGCAGATGTAATTGC
TACTATTGAGATGGCGAAGAAAGTCAAAGCCGCGCAACCAAAGCTGTTTGATTACTTTTACTCGATGCGTAACAAGCGCA
AGCTGAACGAGTTAGTCGATATTGTAAACATGACGCCATTGATGCACGTGTCAAGCATGTTGGGACGTGAGTGCCAATAC
ACAAGCTGGATTGTTCCAGTGGCTTGGCATCCAACCAACAACAACGCCGTCATCACGATTGATTTAGCCAAAGATCCTCA
GCCAATCCTTGAGCTTTCAGCAGAAGAGTTGAAAGAGCGTTTGTACACCAAGCGTGAAGAACTGGGTGACTTACTGCCTG
TACCCGTAAAGCTCGTGCATCTGAACAAGTGCCCTATTCTTGCTCCAGCTAAAACGTTAACGGCAGAGAACGCTGAAGTG
ATTGGAATCGACCGTCAGAAATGTTTGAGTAATCTGGCGTTGCTGCGTCAACACCCAGAGATCCGTGAGAAGCTAATTAG
TCTATTCTCTATTGAGCGTGAGTTCGAAAAGAGCGATGATGTGGATACGCAACTGTACGATGGCTTCTTTTCACCAGCAG
ATCGCGCAGCGATGGACATCATTCGTGAAACAGACCCAAATAACCTTGCTGCGCTGGATATTGAGTTTGATGACAAACGC
ATCAAGCCGTTGCTGTTTCGTTACCGTGCCCGTCACTACGCTGGCACACTGGATGAGCAAGAACAAAGACGTTGGGCACA
ACACTGTCGTGAAGTTTTCGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCGATACTAAAATCCGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.281

100

0.793

Multiple sequence alignment