Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   KJB05_RS03460 Genome accession   NZ_HG992742
Coordinates   727112..727630 (+) Length   172 a.a.
NCBI ID   WP_005438047.1    Uniprot ID   A0A812FIS6
Organism   Vibrio sp. B1ASS3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 722112..732630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJB05_RS03450 (ACOMICROBIO_LOCUS447) gshA 724827..726395 (+) 1569 WP_208445023.1 glutamate--cysteine ligase -
  KJB05_RS03455 (ACOMICROBIO_NCLOACGD_00704) - 726415..727020 (+) 606 WP_005438049.1 hypothetical protein -
  KJB05_RS03460 (ACOMICROBIO_LOCUS448) luxS 727112..727630 (+) 519 WP_005438047.1 S-ribosylhomocysteine lyase Regulator
  KJB05_RS03465 (ACOMICROBIO_LOCUS449) - 727717..728997 (-) 1281 WP_009707575.1 CNNM domain-containing protein -
  KJB05_RS03470 (ACOMICROBIO_NCLOACGD_00707) - 729152..729946 (-) 795 WP_005438043.1 inner membrane protein YpjD -
  KJB05_RS03475 (ACOMICROBIO_LOCUS450) ffh 730160..731548 (+) 1389 WP_005438041.1 signal recognition particle protein -
  KJB05_RS03480 (ACOMICROBIO_LOCUS451) rpsP 731759..732007 (+) 249 WP_005438039.1 30S ribosomal protein S16 -
  KJB05_RS03485 (ACOMICROBIO_LOCUS452) rimM 732038..732586 (+) 549 WP_005438038.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19116.87 Da        Isoelectric Point: 4.7373

>NTDB_id=1112386 KJB05_RS03460 WP_005438047.1 727112..727630(+) (luxS) [Vibrio sp. B1ASS3]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGESVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1112386 KJB05_RS03460 WP_005438047.1 727112..727630(+) (luxS) [Vibrio sp. B1ASS3]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGCATGAATGCACCAGCAGTCCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGGGACACCATCACGGTATTCGACCTACGTTTCACTGCGCCAAACAAAGACATCCTTTCTGAGAAAGGGATTC
ATACATTAGAACACTTGTACGCAGGCTTTATGCGTAACCACTTAAATGGTGAGAGTGTTGAGATCATTGATATTTCACCA
ATGGGCTGTCGCACTGGTTTCTACATGAGTTTGATTGGCACACCTTCAGAGCAACAAGTGGCTGACGCTTGGATTGCCGC
GATGGAAGATGTTTTGAAAGTAGAAAACCAAAACAAGATCCCTGAGTTGAACGAATACCAATGTGGCACGGCAGCAATGC
ATTCTCTGGATGAAGCAAAGCAAATCGCGAAGAACATTCTAGAAGCCGGTGTATCAGTCAACAAGAATGACGAGCTTGCG
CTGCCAGAGTCAATGCTAAAAGAACTACGCATTGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812FIS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment