Detailed information NTG1112383

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KJB05_RS03080
• Genome accession: NZ_HG992742
• Coordinates: 640020..641003 (+)
• Length: 327 a.a.
• NCBI ID: WP_005452115.1
• Uniprot ID: A0A812FCY7
• Organism: Vibrio sp. B1ASS3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 635020..646003

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KJB05_RS03045 (ACOMICROBIO_LOCUS407)	ftsB	635026..635307 (+)	282	WP_005452106.1	cell division protein FtsB	-
KJB05_RS03050 (ACOMICROBIO_LOCUS408)	ispD	635309..636019 (+)	711	WP_208445626.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KJB05_RS03055 (ACOMICROBIO_LOCUS409)	ispF	636034..636510 (+)	477	WP_009698769.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KJB05_RS03060 (ACOMICROBIO_LOCUS410)	truD	636556..637599 (+)	1044	WP_069218580.1	tRNA pseudouridine(13) synthase TruD	-
KJB05_RS03065 (ACOMICROBIO_NCLOACGD_00622)	surE	637599..638375 (+)	777	WP_005436425.1	5'/3'-nucleotidase SurE	-
KJB05_RS03070 (ACOMICROBIO_LOCUS411)	-	638375..639001 (+)	627	WP_208445625.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
KJB05_RS03075 (ACOMICROBIO_LOCUS412)	-	639016..639939 (+)	924	WP_009698767.1	peptidoglycan DD-metalloendopeptidase family protein	-
KJB05_RS03080 (ACOMICROBIO_LOCUS413)	rpoS	640020..641003 (+)	984	WP_005452115.1	RNA polymerase sigma factor RpoS	Regulator
KJB05_RS03085 (ACOMICROBIO_LOCUS414)	mutS	641097..643682 (-)	2586	WP_208445624.1	DNA mismatch repair protein MutS	-
KJB05_RS03090 (ACOMICROBIO_LOCUS415)	-	643855..645194 (+)	1340	Protein_538	tyrosine-type recombinase/integrase	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37236.10 Da
• Isoelectric Point: 4.7232

>NTDB_id=1112383 KJB05_RS03080 WP_005452115.1 640020..641003(+) (rpoS) [Vibrio sp. B1ASS3]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=1112383 KJB05_RS03080 WP_005452115.1 640020..641003(+) (rpoS) [Vibrio sp. B1ASS3]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGTCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACTTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGTAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACTCCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACCCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A812FCY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.856