Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   GBSCOH1_RS01010 Genome accession   NZ_HG939456
Coordinates   165447..166496 (+) Length   349 a.a.
NCBI ID   WP_000410289.1    Uniprot ID   -
Organism   Streptococcus agalactiae COH1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 160447..171496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBSCOH1_RS00995 (GBSCOH1_0149) - 161706..163364 (+) 1659 WP_001118750.1 peptide ABC transporter substrate-binding protein -
  GBSCOH1_RS01000 (GBSCOH1_0150) - 163479..164393 (+) 915 WP_000598967.1 ABC transporter permease -
  GBSCOH1_RS01005 (GBSCOH1_0151) - 164403..165434 (+) 1032 WP_000764053.1 ABC transporter permease -
  GBSCOH1_RS01010 (GBSCOH1_0152) oppD 165447..166496 (+) 1050 WP_000410289.1 ABC transporter ATP-binding protein Regulator
  GBSCOH1_RS01015 (GBSCOH1_0153) amiF 166493..167425 (+) 933 WP_000138503.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 38886.38 Da        Isoelectric Point: 4.7679

>NTDB_id=1112201 GBSCOH1_RS01010 WP_000410289.1 165447..166496(+) (oppD) [Streptococcus agalactiae COH1]
MEKETILSVNNLHVDFHTYAGEVKAIRDVNFELKKGETLAIVGESGSGKSVTTRTLIGLNAKNSEISGNVQFKGRNLVEL
SEEEWTKVRGNEISMIFQDPMTSLDPTMKIGMQIAEPMMIHQKISKKDALKLALELMKDVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAADPEILIADEPTTALDVTIQAQILNLMKKIQAERDSSIVFITHDLGVVAGMADRVAVMYAGKIVEFGTV
DEVFYNPQHPYTWGLLNSMPTTETESGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHEEEPPYFKVSETHFAATWLL
DERSPKVLPPLPIQKRWEKWNEIEGRKAQ

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1112201 GBSCOH1_RS01010 WP_000410289.1 165447..166496(+) (oppD) [Streptococcus agalactiae COH1]
ATGGAAAAAGAAACTATTTTAAGTGTTAATAATCTTCATGTTGACTTCCACACATATGCTGGAGAAGTAAAAGCAATTCG
TGATGTCAACTTTGAATTAAAAAAAGGTGAGACTCTTGCAATCGTTGGTGAATCTGGTTCAGGAAAATCTGTAACTACCA
GAACTTTAATTGGTTTAAATGCTAAAAATTCAGAGATATCAGGGAATGTTCAATTTAAGGGGCGTAACCTTGTTGAACTA
TCAGAAGAAGAGTGGACTAAGGTACGCGGGAATGAGATTTCTATGATTTTCCAAGACCCTATGACTAGTTTGGATCCAAC
GATGAAAATTGGTATGCAAATAGCGGAGCCAATGATGATTCATCAAAAAATTTCAAAAAAGGATGCTTTAAAATTAGCTC
TTGAGCTAATGAAAGATGTAGGTATCCCAAATGCTGAAGAGCATATTAACGATTACCCACATCAGTGGTCTGGAGGAATG
CGTCAACGTGCGGTTATAGCGATTGCTTTAGCTGCTGATCCTGAAATTCTTATTGCTGATGAACCAACGACTGCTTTAGA
TGTAACAATTCAAGCACAAATTTTAAACTTAATGAAAAAAATTCAAGCAGAACGAGACTCCTCCATTGTTTTCATAACTC
ATGACTTAGGGGTCGTTGCAGGGATGGCAGACCGTGTAGCAGTTATGTATGCAGGGAAAATCGTTGAATTTGGAACTGTT
GATGAAGTCTTTTATAATCCACAACATCCATATACTTGGGGATTATTGAATTCAATGCCGACAACCGAAACAGAATCAGG
TAGTTTAGAGTCAATTCCGGGAACACCACCAGATTTGTTGAACCCACCTAAAGGAGATGCATTTGCAGCTCGTAATGAAT
TTGCATTAGATATTGATCATGAAGAAGAACCACCGTACTTCAAAGTTTCAGAAACACATTTCGCTGCTACATGGCTTTTA
GATGAAAGATCACCTAAGGTGCTTCCTCCATTACCGATCCAAAAACGTTGGGAAAAATGGAACGAGATTGAAGGGAGGAA
AGCCCAATGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

78.963

99.427

0.785
  amiE Streptococcus salivarius strain HSISS4

55.162

97.135

0.536
  amiE Streptococcus thermophilus LMG 18311

54.572

97.135

0.53
  amiE Streptococcus thermophilus LMD-9

54.572

97.135

0.53

Multiple sequence alignment