Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   GJA_RS22590 Genome accession   NZ_HG322949
Coordinates   5233232..5234725 (-) Length   497 a.a.
NCBI ID   WP_038496881.1    Uniprot ID   W0V9I8
Organism   Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5228232..5239725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJA_RS22565 (GJA_4860) queF 5229170..5230003 (+) 834 WP_038500817.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  GJA_RS22570 (GJA_4861) - 5230329..5230811 (+) 483 WP_038496869.1 PTS sugar transporter subunit IIA -
  GJA_RS22575 (GJA_4862) hprK 5230849..5231784 (+) 936 WP_038496872.1 HPr(Ser) kinase/phosphatase -
  GJA_RS22580 (GJA_4863) rapZ 5231863..5232726 (+) 864 WP_038496875.1 RNase adapter RapZ -
  GJA_RS22585 (GJA_4864) raiA 5232793..5233146 (-) 354 WP_038496878.1 ribosome-associated translation inhibitor RaiA -
  GJA_RS22590 (GJA_4865) rpoN/rpoN1 5233232..5234725 (-) 1494 WP_038496881.1 RNA polymerase factor sigma-54 Machinery gene
  GJA_RS22595 (GJA_4866) lptB 5234731..5235486 (-) 756 WP_038496884.1 LPS export ABC transporter ATP-binding protein -
  GJA_RS22600 (GJA_4867) lptA 5235486..5236079 (-) 594 WP_339325669.1 lipopolysaccharide transport periplasmic protein LptA -
  GJA_RS22605 (GJA_4868) lptC 5236152..5236664 (-) 513 WP_242404688.1 LPS export ABC transporter periplasmic protein LptC -
  GJA_RS22610 (GJA_4869) - 5236802..5237335 (-) 534 WP_038496890.1 HAD hydrolase family protein -
  GJA_RS22615 (GJA_4870) - 5237335..5238345 (-) 1011 WP_197539810.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55007.56 Da        Isoelectric Point: 5.1777

>NTDB_id=1111911 GJA_RS22590 WP_038496881.1 5233232..5234725(-) (rpoN/rpoN1) [Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQLLTDNPLLERLDDPLDHSLRLLSDGALSPLSAPSEGPPQPP
GQDGAGPDAPGAAEAEHFEGEGASETSTAADNTDSDWSEAGRSKAPDDEDARPQLEASHCTLREHLMEQVRVTVLELRDR
ALVELIIDALDDNGYLEEPLEEILARLPAELEIDPDELHIALSLLQSFDPPGVGARNASECLALQIKRLPHIALVTRRMA
LQIVEQHLTWFAQRDFNKLKKALACDDEDLREAQAVIRQCNPHPGAVFASDVSDYVVPDVVVKRSRNGWQVSLNHDVMPR
LRVNAMYANLLKQGKGEGAMGAQLQEAKWLIKNMRQRFDTILRVAQAIVERQKNFFSHGAVAMRPLVLREIADTLGLHES
TISRVTTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIVQLTGAEDPKNPLSDSKIADMLGEQGMVIARRTVA
KYREALKIPPVSLRKSL

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1111911 GJA_RS22590 WP_038496881.1 5233232..5234725(-) (rpoN/rpoN1) [Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628]
ATGAAACAATCTTTGCAACTGCGCACTTCGCAACATCTGGCGCTGACGCCGCAATTGCAGCAATCGATACGGCTGCTGCA
ATTGTCTACCCTGGAATTGCACCAGGAACTGGAACAGTTGCTGACCGACAATCCCTTGCTGGAGCGCCTGGACGATCCGC
TCGACCATTCGCTGCGGCTGCTGTCCGATGGTGCGCTGAGCCCGCTTAGCGCACCGTCTGAAGGGCCGCCGCAGCCGCCA
GGCCAGGATGGCGCCGGGCCGGATGCGCCGGGCGCGGCCGAGGCCGAGCATTTCGAAGGCGAGGGCGCCAGCGAGACCAG
CACCGCGGCCGACAATACCGACAGCGACTGGAGCGAAGCGGGACGCAGCAAGGCGCCTGACGACGAGGATGCCCGGCCGC
AGCTGGAAGCGAGCCACTGCACGCTGCGCGAACACTTGATGGAGCAGGTGCGCGTGACCGTGCTGGAATTGCGCGACCGC
GCGCTGGTCGAGCTGATCATCGACGCGCTCGACGACAACGGCTACCTGGAAGAGCCGCTGGAAGAAATCCTGGCGCGCCT
GCCGGCCGAACTGGAAATCGATCCCGACGAATTGCATATCGCGCTGTCGCTGCTGCAAAGCTTCGACCCGCCGGGCGTCG
GCGCGCGCAATGCGTCGGAATGCCTGGCGCTGCAAATCAAGCGCCTGCCGCACATCGCGCTGGTGACGCGGCGCATGGCC
TTGCAGATCGTCGAACAGCACCTGACCTGGTTTGCGCAGCGCGACTTCAACAAGCTCAAGAAAGCCCTGGCTTGCGACGA
CGAAGACTTGCGCGAAGCGCAGGCGGTGATTCGCCAATGCAATCCGCACCCGGGCGCCGTGTTCGCGTCGGACGTGTCCG
ATTACGTGGTGCCGGACGTGGTCGTCAAGCGCTCGCGCAATGGCTGGCAAGTCAGCCTGAACCACGACGTGATGCCGCGT
TTGCGGGTCAACGCGATGTACGCCAACCTGCTGAAACAGGGCAAGGGCGAGGGCGCGATGGGCGCGCAATTGCAGGAAGC
CAAGTGGCTGATCAAGAATATGCGCCAGCGTTTCGACACCATTTTGCGGGTCGCGCAAGCGATAGTAGAACGACAAAAGA
ATTTTTTCTCGCATGGAGCGGTTGCCATGCGGCCCCTTGTGCTTCGTGAAATAGCTGATACACTGGGACTACACGAGAGC
ACGATCTCTCGGGTAACAACCCAGAAATACATGCTGACCCCGCACGGCATGTTTGAGTTGAAATATTTCTTTGGTAGCCA
CGTCGCCACCGAAGCGGGCGGCGAAGCGTCGTCGACGGCGATACGGGCACTGATAGTGCAATTGACAGGAGCTGAAGACC
CTAAAAATCCTTTATCCGACAGTAAGATTGCCGACATGCTGGGGGAACAAGGCATGGTGATTGCGCGACGCACTGTTGCC
AAATACCGGGAAGCGCTGAAAATTCCGCCAGTTAGCCTGCGCAAATCTTTATAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(136-327)

Sigma-54, DNA binding domain (Sigma54_DBD)

(342-495)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0V9I8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

61.1

100

0.626

Multiple sequence alignment