Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GJA_RS20870 | Genome accession | NZ_HG322949 |
| Coordinates | 4868373..4869434 (+) | Length | 353 a.a. |
| NCBI ID | WP_038496125.1 | Uniprot ID | W0VCS7 |
| Organism | Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4863373..4874434
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJA_RS20850 (GJA_4495) | - | 4864137..4864673 (-) | 537 | WP_038500644.1 | chalcone isomerase family protein | - |
| GJA_RS20855 (GJA_4496) | - | 4864717..4865973 (-) | 1257 | WP_038496121.1 | cyclopropane-fatty-acyl-phospholipid synthase family protein | - |
| GJA_RS20860 (GJA_4497) | - | 4865970..4866764 (-) | 795 | WP_038496123.1 | DUF1365 domain-containing protein | - |
| GJA_RS20865 (GJA_4498) | - | 4866754..4868043 (-) | 1290 | WP_038500647.1 | FAD-dependent oxidoreductase | - |
| GJA_RS20870 (GJA_4500) | pilA | 4868373..4869434 (+) | 1062 | WP_038496125.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| GJA_RS20875 (GJA_4501) | - | 4869442..4870104 (+) | 663 | WP_038500650.1 | ATP-binding cassette domain-containing protein | - |
| GJA_RS20880 (GJA_4502) | ftsX | 4870101..4871021 (+) | 921 | WP_038496127.1 | permease-like cell division protein FtsX | - |
| GJA_RS20885 (GJA_4503) | rpoH | 4871615..4872514 (+) | 900 | WP_174525969.1 | RNA polymerase sigma factor RpoH | - |
| GJA_RS27545 | - | 4872896..4873132 (+) | 237 | WP_144241610.1 | hypothetical protein | - |
| GJA_RS27550 | - | 4873308..4873520 (+) | 213 | WP_144241611.1 | hypothetical protein | - |
| GJA_RS20890 (GJA_4505) | - | 4873684..4873947 (-) | 264 | WP_038496131.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37345.49 Da Isoelectric Point: 7.5188
>NTDB_id=1111906 GJA_RS20870 WP_038496125.1 4868373..4869434(+) (pilA) [Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628]
MFSFFKKKTAAPAVAPQPAETIAPLAPPPTPVSAPPATPAIPAVAHTPLASDGEKKQSWMSRLKAGLSKTSSTLSVLFVG
AKIDDDLYDELEAALLMADAGMDATDYLLTALKKKVKEDKLLDADAVKAALKVLLIDLLTPLQRPFELGRHKPLVMMISG
VNGAGKTTTIGKLAKHLQTHNQSVLLAAGDTFRAAAREQLMVWGERNNITVISQESGDPAAVAYDSVQSAKARGIDVVMV
DTAGRLPTQLHLMEELKKIKRVIGKGLEGAPHETLLVIDGNTGQNALAQVKAFDDALTLSGLVITKLDGTAKGGVLAAIA
RVRPVPVYFIGIGEKIEDLQPFVAAEFVEALLG
MFSFFKKKTAAPAVAPQPAETIAPLAPPPTPVSAPPATPAIPAVAHTPLASDGEKKQSWMSRLKAGLSKTSSTLSVLFVG
AKIDDDLYDELEAALLMADAGMDATDYLLTALKKKVKEDKLLDADAVKAALKVLLIDLLTPLQRPFELGRHKPLVMMISG
VNGAGKTTTIGKLAKHLQTHNQSVLLAAGDTFRAAAREQLMVWGERNNITVISQESGDPAAVAYDSVQSAKARGIDVVMV
DTAGRLPTQLHLMEELKKIKRVIGKGLEGAPHETLLVIDGNTGQNALAQVKAFDDALTLSGLVITKLDGTAKGGVLAAIA
RVRPVPVYFIGIGEKIEDLQPFVAAEFVEALLG
Nucleotide
Download Length: 1062 bp
>NTDB_id=1111906 GJA_RS20870 WP_038496125.1 4868373..4869434(+) (pilA) [Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628]
ATGTTTAGTTTCTTCAAGAAAAAAACTGCCGCTCCTGCCGTTGCGCCGCAACCCGCCGAAACCATCGCGCCGCTGGCACC
TCCCCCCACCCCGGTTTCCGCCCCGCCGGCGACGCCAGCAATCCCTGCAGTCGCTCATACGCCGCTCGCCAGCGACGGCG
AAAAGAAACAATCGTGGATGTCGCGCCTGAAGGCCGGTTTGTCGAAAACCTCATCGACGCTGAGCGTGCTGTTTGTCGGC
GCCAAGATCGACGACGACTTGTATGACGAGCTGGAAGCGGCGCTGCTGATGGCCGACGCCGGCATGGACGCCACCGATTA
CCTGCTGACGGCGCTCAAGAAAAAGGTCAAGGAAGACAAATTGCTCGATGCCGACGCCGTCAAGGCCGCGCTGAAAGTCT
TGCTGATCGATTTGCTGACCCCGCTTCAGCGGCCGTTCGAGCTGGGGCGCCACAAACCGCTGGTGATGATGATTTCCGGC
GTCAACGGCGCAGGCAAGACCACCACCATCGGCAAATTGGCGAAACACTTGCAAACCCACAATCAATCGGTGTTGCTGGC
CGCCGGCGACACCTTCCGCGCCGCCGCCCGCGAGCAATTGATGGTCTGGGGCGAACGCAACAACATCACCGTCATTTCGC
AGGAGTCCGGCGATCCGGCCGCCGTCGCATACGACTCGGTGCAATCGGCCAAGGCGCGCGGCATCGATGTGGTGATGGTC
GACACGGCCGGCCGCTTGCCGACCCAGTTGCACCTGATGGAAGAATTGAAAAAGATTAAACGCGTGATCGGCAAGGGCCT
GGAAGGCGCGCCGCATGAAACCTTGTTGGTGATCGACGGCAATACCGGCCAGAACGCGCTGGCCCAGGTCAAGGCTTTCG
ACGACGCGCTGACCTTGAGCGGCCTGGTGATCACCAAGCTGGACGGCACCGCCAAGGGCGGTGTGCTGGCGGCAATCGCC
CGCGTGCGGCCAGTGCCGGTGTATTTCATCGGCATCGGTGAAAAGATTGAGGACTTGCAGCCGTTCGTGGCTGCCGAATT
TGTCGAAGCGCTGCTCGGATAA
ATGTTTAGTTTCTTCAAGAAAAAAACTGCCGCTCCTGCCGTTGCGCCGCAACCCGCCGAAACCATCGCGCCGCTGGCACC
TCCCCCCACCCCGGTTTCCGCCCCGCCGGCGACGCCAGCAATCCCTGCAGTCGCTCATACGCCGCTCGCCAGCGACGGCG
AAAAGAAACAATCGTGGATGTCGCGCCTGAAGGCCGGTTTGTCGAAAACCTCATCGACGCTGAGCGTGCTGTTTGTCGGC
GCCAAGATCGACGACGACTTGTATGACGAGCTGGAAGCGGCGCTGCTGATGGCCGACGCCGGCATGGACGCCACCGATTA
CCTGCTGACGGCGCTCAAGAAAAAGGTCAAGGAAGACAAATTGCTCGATGCCGACGCCGTCAAGGCCGCGCTGAAAGTCT
TGCTGATCGATTTGCTGACCCCGCTTCAGCGGCCGTTCGAGCTGGGGCGCCACAAACCGCTGGTGATGATGATTTCCGGC
GTCAACGGCGCAGGCAAGACCACCACCATCGGCAAATTGGCGAAACACTTGCAAACCCACAATCAATCGGTGTTGCTGGC
CGCCGGCGACACCTTCCGCGCCGCCGCCCGCGAGCAATTGATGGTCTGGGGCGAACGCAACAACATCACCGTCATTTCGC
AGGAGTCCGGCGATCCGGCCGCCGTCGCATACGACTCGGTGCAATCGGCCAAGGCGCGCGGCATCGATGTGGTGATGGTC
GACACGGCCGGCCGCTTGCCGACCCAGTTGCACCTGATGGAAGAATTGAAAAAGATTAAACGCGTGATCGGCAAGGGCCT
GGAAGGCGCGCCGCATGAAACCTTGTTGGTGATCGACGGCAATACCGGCCAGAACGCGCTGGCCCAGGTCAAGGCTTTCG
ACGACGCGCTGACCTTGAGCGGCCTGGTGATCACCAAGCTGGACGGCACCGCCAAGGGCGGTGTGCTGGCGGCAATCGCC
CGCGTGCGGCCAGTGCCGGTGTATTTCATCGGCATCGGTGAAAAGATTGAGGACTTGCAGCCGTTCGTGGCTGCCGAATT
TGTCGAAGCGCTGCTCGGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
55.271 |
99.433 |
0.55 |