Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GJA_RS15110 Genome accession   NZ_HG322949
Coordinates   3557887..3559272 (-) Length   461 a.a.
NCBI ID   WP_038493617.1    Uniprot ID   -
Organism   Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3552887..3564272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJA_RS15095 (GJA_3259) - 3554455..3555657 (-) 1203 WP_038499976.1 MFS transporter -
  GJA_RS15100 (GJA_3260) fliD 3555866..3557245 (-) 1380 WP_038493614.1 flagellar filament capping protein FliD -
  GJA_RS15105 (GJA_3261) - 3557445..3557765 (-) 321 WP_242404552.1 PilZ domain-containing protein -
  GJA_RS15110 (GJA_3262) radA 3557887..3559272 (-) 1386 WP_038493617.1 DNA repair protein RadA Machinery gene
  GJA_RS15115 (GJA_3263) alr 3559318..3560391 (-) 1074 WP_038493620.1 alanine racemase -
  GJA_RS15120 (GJA_3264) lplT 3560520..3561782 (+) 1263 WP_038493622.1 lysophospholipid transporter LplT -
  GJA_RS15125 (GJA_3265) - 3561819..3562763 (-) 945 WP_038493625.1 DUF1853 family protein -
  GJA_RS15130 (GJA_3266) - 3562747..3563667 (-) 921 WP_038493628.1 uracil-DNA glycosylase -
  GJA_RS15135 (GJA_3267) rimI 3563664..3564134 (-) 471 WP_038493631.1 ribosomal protein S18-alanine N-acetyltransferase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 49144.67 Da        Isoelectric Point: 7.0477

>NTDB_id=1111900 GJA_RS15110 WP_038493617.1 3557887..3559272(-) (radA) [Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628]
MAKAKTHYTCSECGAISNKWTGQCSSCNQWNTMVETLVEAPGAGNNRYSNPPQHMSLAQTAPVLSLADIDAIDVPRFGTG
IEEFDRVLGGGMVSGGVVLIGGDPGIGKSTLLLQALANMSHQKSVLYVSGEESGAQIALRAKRLMIDAKDLKLQAEIQLE
KILGTLADLKPDVAVIDSIQTVYSDALTAAPGSVSQVRECAAQLTRVAKQTGITIILVGHVTKEGALAGPRVLEHIVDTV
LYFEGDAHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVAGSCVMVTQEGTRPLLVEIQALVDT
SHLPNARRLSVGLEQNRLAMLLAVAHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRSKPLPRGLVVFGEV
GLAGEIRPAPRGQERLREAAKLGFSLAMIPKSNMPKQAIEGMTIIAVERIEEAFNKLRDHE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1111900 GJA_RS15110 WP_038493617.1 3557887..3559272(-) (radA) [Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628]
ATGGCCAAAGCAAAAACCCATTACACGTGCAGCGAGTGCGGCGCCATCAGCAATAAGTGGACCGGCCAGTGTTCCTCCTG
TAATCAATGGAATACCATGGTCGAAACGCTGGTCGAGGCGCCCGGCGCCGGCAATAACCGCTATTCGAATCCGCCGCAGC
ATATGTCGCTGGCGCAGACCGCGCCGGTGCTGTCGCTGGCCGATATCGATGCGATCGACGTGCCGCGCTTCGGCACCGGC
ATCGAGGAATTCGACCGGGTGCTGGGCGGCGGCATGGTGTCCGGCGGGGTGGTGCTGATCGGCGGCGATCCGGGCATCGG
CAAGTCGACGCTGCTGTTGCAGGCGCTGGCGAATATGTCGCACCAGAAAAGCGTGCTGTATGTCAGCGGCGAGGAATCCG
GCGCCCAGATCGCGCTGCGCGCCAAGCGGCTGATGATCGACGCCAAGGATTTGAAGCTGCAGGCGGAAATCCAGCTGGAA
AAAATCCTCGGCACGCTGGCCGACCTGAAACCCGACGTGGCCGTCATCGATTCGATCCAGACCGTGTATTCCGATGCGCT
GACGGCCGCGCCCGGTTCGGTGTCGCAAGTGCGCGAATGCGCGGCGCAATTGACGCGGGTCGCCAAGCAGACCGGCATCA
CCATCATCCTGGTCGGCCATGTGACCAAGGAGGGCGCGCTGGCCGGGCCGCGCGTGCTGGAGCATATCGTCGATACCGTG
CTGTATTTCGAGGGCGATGCGCATTCCAGCTTCCGGCTGGTGCGCGCGATCAAGAACCGTTTCGGCGCCGTCAATGAGCT
GGGCGTGTTCGCGATGACGGAAAAGGGCTTGAAGGGGGTCTCGAATCCATCCGCGCTGTTCCTGTCGCAACACGATAACC
AGGTCGCCGGCTCTTGTGTGATGGTGACGCAGGAAGGTACCCGGCCATTGCTGGTGGAAATCCAGGCGCTGGTCGACACC
AGCCATTTGCCGAATGCGCGCCGGCTGTCGGTCGGCCTGGAGCAAAACCGGCTGGCGATGCTGCTGGCGGTGGCGCACCG
CCACGCCGGTATCGCGGCGTTCGACCAGGATGTGTTCATCAATGCGGTGGGCGGCGTCAAGATCACCGAACCGGCGGCCG
ACTTGGCGGTATTACTAGCGATCAACTCGTCGATGCGCAGCAAGCCGTTGCCGCGCGGCCTGGTGGTGTTTGGCGAAGTC
GGCCTGGCCGGCGAAATCCGCCCGGCGCCGCGTGGGCAGGAGCGCTTGCGCGAAGCCGCCAAGCTGGGTTTCTCGCTGGC
AATGATCCCGAAATCGAATATGCCGAAACAGGCCATCGAAGGCATGACCATCATCGCCGTCGAGCGCATCGAGGAAGCAT
TCAACAAATTGCGCGATCACGAATAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(357-455)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.373

100

0.484
  radA Streptococcus mitis NCTC 12261

47.072

100

0.471
  radA Streptococcus mitis SK321

47.072

100

0.471
  radA Streptococcus pneumoniae TIGR4

46.97

100

0.471
  radA Streptococcus pneumoniae R6

46.97

100

0.471
  radA Streptococcus pneumoniae Rx1

46.97

100

0.471
  radA Streptococcus pneumoniae D39

46.97

100

0.471

Multiple sequence alignment