Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   GJA_RS03670 Genome accession   NZ_HG322949
Coordinates   866960..867370 (+) Length   136 a.a.
NCBI ID   WP_038488913.1    Uniprot ID   -
Organism   Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 861960..872370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJA_RS03655 (GJA_765) hemL 864502..865791 (-) 1290 WP_038488905.1 glutamate-1-semialdehyde 2,1-aminomutase -
  GJA_RS03660 (GJA_766) - 865834..866667 (-) 834 WP_038488908.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  GJA_RS03665 (GJA_767) - 866764..866916 (+) 153 WP_038488910.1 rubredoxin -
  GJA_RS03670 (GJA_768) pilG 866960..867370 (+) 411 WP_038488913.1 response regulator Regulator
  GJA_RS03675 (GJA_769) - 867381..867746 (+) 366 WP_038488916.1 response regulator -
  GJA_RS03680 (GJA_770) - 867750..868298 (+) 549 WP_051780249.1 chemotaxis protein CheW -
  GJA_RS03685 (GJA_771) - 868298..870556 (+) 2259 WP_038488919.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14803.97 Da        Isoelectric Point: 7.7314

>NTDB_id=1111897 GJA_RS03670 WP_038488913.1 866960..867370(+) (pilG) [Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628]
MSNDQNSRPTIMVIDDSGTIRRAAATILEQAGYRVEQAEDGFEALARIGDCRPALVLCDILMPRLDGYRTCALIKKSRQF
HATPVLMLSSKDGLFDRARGALAGCSASVAKPFSRDSLLSAVREHLPAGDAMFTHH

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1111897 GJA_RS03670 WP_038488913.1 866960..867370(+) (pilG) [Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628]
ATGTCAAATGATCAAAACAGCCGGCCGACCATCATGGTGATCGACGATAGCGGCACCATCCGGCGCGCCGCCGCAACGAT
ACTGGAGCAGGCCGGCTACCGGGTGGAGCAGGCCGAGGATGGCTTCGAGGCGCTGGCCAGGATCGGCGATTGCCGCCCTG
CGCTGGTCTTGTGCGACATCCTGATGCCGCGCCTGGACGGTTACCGCACTTGCGCATTGATCAAGAAAAGCCGGCAATTC
CATGCGACGCCGGTGTTGATGCTGTCGTCGAAGGACGGCTTGTTCGACCGCGCGCGCGGCGCGCTGGCCGGCTGCAGCGC
GTCGGTGGCCAAGCCGTTTAGCCGGGACAGCCTGTTGTCGGCGGTGCGCGAGCACCTGCCGGCCGGCGACGCCATGTTTA
CCCATCATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

55.932

86.765

0.485

Multiple sequence alignment