Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SPYH293_RS01395 Genome accession   NZ_HG316453
Coordinates   265192..266118 (+) Length   308 a.a.
NCBI ID   WP_053039045.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain H293     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 260192..271118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYH293_RS01385 (SPYH293_00287) amiA 261655..263625 (+) 1971 WP_024623426.1 peptide ABC transporter substrate-binding protein Regulator
  SPYH293_RS01390 (SPYH293_00288) amiC 263690..265192 (+) 1503 WP_002991105.1 ABC transporter permease Regulator
  SPYH293_RS01395 (SPYH293_00289) amiD 265192..266118 (+) 927 WP_053039045.1 oligopeptide ABC transporter permease OppC Regulator
  SPYH293_RS01400 (SPYH293_00290) amiE 266127..267197 (+) 1071 WP_010921893.1 ABC transporter ATP-binding protein Regulator
  SPYH293_RS01405 (SPYH293_00291) amiF 267190..268113 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  SPYH293_RS09190 - 268049..268240 (-) 192 WP_367849538.1 IS3 family transposase -
  SPYH293_RS01410 (SPYH293_00292) - 268261..268440 (-) 180 WP_023612403.1 hypothetical protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34878.81 Da        Isoelectric Point: 8.5670

>NTDB_id=1111854 SPYH293_RS01395 WP_053039045.1 265192..266118(+) (amiD) [Streptococcus pyogenes strain H293]
MESIDKSKFRFVERDSEASEVIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVISTLINITIGVVLGAIWGVSKAFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1111854 SPYH293_RS01395 WP_053039045.1 265192..266118(+) (amiD) [Streptococcus pyogenes strain H293]
ATGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTGATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCCAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCGAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTCTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATATCGACACTAATTAATATCACCATTGGGGTAGTGTTAGGAGCCATATGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGTATCACTGGATGGATTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCAATGTACAAGA
TTGCTGTTAAGAACCTCCTGCCTCAATTGGTTTCAGTTATCATGACTATGTTGTCACAAATGCTACCAGTTTATGTATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACCACTCCAAGTTTAGGACGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCGTTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.377

100

0.734
  amiD Streptococcus thermophilus LMG 18311

72.727

100

0.727
  amiD Streptococcus thermophilus LMD-9

72.727

100

0.727

Multiple sequence alignment