Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CSG_RS04360 Genome accession   NZ_HG004426
Coordinates   856927..857301 (+) Length   124 a.a.
NCBI ID   WP_002849740.1    Uniprot ID   -
Organism   Campylobacter fetus subsp. venerealis str. 84-112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 851927..862301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSG_RS04340 (CSG_8670) - 853034..853846 (-) 813 WP_002849747.1 HDOD domain-containing protein -
  CSG_RS04345 (CSG_8680) ilvC 853993..855015 (+) 1023 WP_002849745.1 ketol-acid reductoisomerase -
  CSG_RS04350 (CSG_8690) - 855094..856179 (+) 1086 WP_134864086.1 divergent polysaccharide deacetylase family protein -
  CSG_RS04355 (CSG_8700) dprA 856163..856930 (+) 768 WP_002849743.1 DNA-processing protein DprA Machinery gene
  CSG_RS04360 (CSG_8710) dprB 856927..857301 (+) 375 WP_002849740.1 Holliday junction resolvase RuvX Machinery gene
  CSG_RS04365 (CSG_8720) - 857309..858172 (+) 864 WP_002849738.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CSG_RS04370 (CSG_8730) - 858158..859402 (-) 1245 WP_011732089.1 hypothetical protein -
  CSG_RS04375 (CSG_8740) queA 859412..860431 (-) 1020 WP_002849734.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CSG_RS04380 (CSG_8750) tatC 860428..861183 (-) 756 WP_002849731.1 twin-arginine translocase subunit TatC -
  CSG_RS04385 (CSG_8760) tatB 861183..861638 (-) 456 WP_002849729.1 Sec-independent protein translocase protein TatB -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13694.09 Da        Isoelectric Point: 8.4803

>NTDB_id=1111833 CSG_RS04360 WP_002849740.1 856927..857301(+) (dprB) [Campylobacter fetus subsp. venerealis str. 84-112]
MIVAIDVGLKRIGVAVAVLPTVVLPSEPILRKNRNQAAKDTLKMLKEKNATKLVVGLPKGGSCEDEMERRIKHFISLVGF
DSEIIYVDEAYSSCEASELSKDSKDGRFDSIAAMVILKRYLNIL

Nucleotide


Download         Length: 375 bp        

>NTDB_id=1111833 CSG_RS04360 WP_002849740.1 856927..857301(+) (dprB) [Campylobacter fetus subsp. venerealis str. 84-112]
TTGATAGTAGCTATCGATGTCGGACTAAAAAGAATAGGAGTTGCGGTTGCGGTTTTACCGACTGTTGTACTTCCTAGCGA
ACCTATTTTACGTAAAAATCGCAATCAGGCGGCGAAAGATACTTTAAAAATGTTAAAAGAAAAAAATGCGACAAAACTAG
TAGTCGGCTTGCCAAAAGGCGGCAGCTGCGAGGATGAAATGGAAAGACGAATTAAGCATTTTATCTCTTTAGTCGGTTTT
GATTCAGAGATAATTTATGTTGATGAAGCTTATAGCAGCTGCGAAGCTAGCGAACTGTCAAAAGATTCTAAAGACGGTAG
ATTTGATAGCATTGCCGCTATGGTGATTTTAAAAAGATATCTAAATATTTTGTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

50.388

100

0.524

Multiple sequence alignment