Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HMPREF9319_RS09100 Genome accession   NZ_GL397128
Coordinates   1895583..1896944 (-) Length   453 a.a.
NCBI ID   WP_041974187.1    Uniprot ID   A0AAW6YM29
Organism   Streptococcus equinus ATCC 700338     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1890583..1901944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9319_RS09080 (HMPREF9319_1896) - 1891386..1892552 (-) 1167 WP_003066692.1 CynX/NimT family MFS transporter -
  HMPREF9319_RS09085 (HMPREF9319_1897) gltX 1892725..1894182 (-) 1458 WP_041974164.1 glutamate--tRNA ligase -
  HMPREF9319_RS09090 (HMPREF9319_1898) - 1894367..1894861 (-) 495 WP_003066694.1 LURP-one-related/scramblase family protein -
  HMPREF9319_RS09095 (HMPREF9319_1899) - 1894964..1895458 (-) 495 WP_003066696.1 beta-class carbonic anhydrase -
  HMPREF9319_RS09100 (HMPREF9319_1900) radA 1895583..1896944 (-) 1362 WP_041974187.1 DNA repair protein RadA Machinery gene
  HMPREF9319_RS09105 (HMPREF9319_1901) - 1896962..1897453 (-) 492 WP_003066699.1 histidine phosphatase family protein -
  HMPREF9319_RS09110 (HMPREF9319_1902) - 1897526..1897972 (-) 447 WP_003066701.1 dUTP diphosphatase -
  HMPREF9319_RS09115 (HMPREF9319_1903) - 1897999..1898766 (-) 768 WP_003066703.1 epoxyqueuosine reductase QueH -
  HMPREF9319_RS09120 (HMPREF9319_1904) - 1899987..1900190 (-) 204 WP_003066706.1 cold-shock protein -
  HMPREF9319_RS10850 (HMPREF9319_1905) - 1900368..1900508 (-) 141 WP_003066708.1 hypothetical protein -
  HMPREF9319_RS10555 (HMPREF9319_1906) - 1900917..1901033 (+) 117 Protein_1861 integrase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49468.82 Da        Isoelectric Point: 6.2712

>NTDB_id=1111707 HMPREF9319_RS09100 WP_041974187.1 1895583..1896944(-) (radA) [Streptococcus equinus ATCC 700338]
MAKKKTTFICQECGYHSPKYLGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSIHYSRTKTGMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRAQIE
QIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNSLSGIDIPDNIQVIGVTTVGEVLKKVFV

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1111707 HMPREF9319_RS09100 WP_041974187.1 1895583..1896944(-) (radA) [Streptococcus equinus ATCC 700338]
ATCGCTAAGAAAAAAACAACATTTATTTGTCAGGAGTGTGGCTATCATTCTCCGAAATATTTGGGACGTTGTCCGAATTG
TTCGTCTTGGACGTCTTTTGTTGAAGAAGTTGAGGTGCAAGAAGTCAAAAATGCGCGTGTTAGTTTGACGGGTGAAAAAA
GCAAACCGACTAAGTTAAAGGATGTTAGCTCGATTCATTATTCACGCACGAAGACTGGCATGGATGAATTTAACCGCGTG
CTTGGTGGCGGTGTGGTGCCAGGTAGTTTGGTGCTTATCGGTGGTGACCCAGGTATCGGAAAATCAACGCTTCTTTTGCA
GGTATCTATTCAACTTGCAGATAAGGGAACGGTTCTTTACGTTTCTGGGGAAGAATCAGCAGAGCAGATTAAACTACGTA
GTGAGCGTCTCGGCGACATTGACAATGAATTTTACCTTTATGCTGAAACGAATATGCAAGCCATTCGCGCACAGATTGAG
CAAATTCAGCCTGATTTCTTGATTATTGACTCGATTCAGACCATTATGAGCCCTGATATTTCTGGGGTTCAAGGGTCGGT
ATCACAAGTACGTGAAGTGACTGCAGAGTTGATGCAACTGGCTAAGACAAATAATATTGCAACCTTTATCGTTGGTCACG
TGACTAAGGAAGGGCAGCTTGCAGGACCGCGCATGCTTGAGCATATGGTGGATACAGTGCTTTATTTTGAAGGGGAACGT
CATCACACCTTCCGTATTTTACGTGCTGTGAAAAATCGTTTTGGTTCAACTAACGAAATCGGCATTTTTGAAATGCAATC
TGGTGGTCTTGTTGAAGTGCTTAATCCGAGCCAAGTTTTCTTAGAAGAACGTTTGGACGGTGCAACGGGGTCAGCTATCG
TGGTTACCATGGAAGGTAGCCGTCCAATTTTGGCGGAAGTCCAAGCTTTGGTAACGCCGACAGTCTTTGGAAATGCCAAA
CGCACCACGACAGGACTGGATTTTAACCGTGTTAGCCTTATTATGGCGGTGCTTGAAAAACGTTGTGGACTTTTATTGCA
AAATCAAGATGCTTATTTGAAATCGGCTGGTGGTGTTAAACTTGATGAGCCAGCGATTGATTTGGCAGTAGCGGTAGCCA
TTGCGTCAAGCTATAAAGAAAAGCCAACAAATCCACAGGAAGCCTTCATCGGTGAAATTGGTTTGACAGGCGAAATTCGT
CGTGTGACACGTATTGAGCAACGTATCAACGAAGCAGCAAAACTTGGTTTTACTAAAGTTTATGCTCCTAAAAACTCTCT
GTCAGGTATTGATATTCCAGACAATATTCAAGTCATTGGTGTGACAACTGTGGGCGAAGTCCTCAAAAAAGTTTTTGTGT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(72-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.717

99.779

0.885
  radA Streptococcus pneumoniae D39

88.717

99.779

0.885
  radA Streptococcus pneumoniae R6

88.717

99.779

0.885
  radA Streptococcus pneumoniae TIGR4

88.717

99.779

0.885
  radA Streptococcus mitis SK321

88.717

99.779

0.885
  radA Streptococcus mitis NCTC 12261

88.496

99.779

0.883
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

100

0.62

Multiple sequence alignment