Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   ACMCNG_RS02005 Genome accession   NZ_AP038785
Coordinates   442053..444440 (+) Length   795 a.a.
NCBI ID   WP_226692700.1    Uniprot ID   -
Organism   Rodentibacter sp. THUN1654     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 437053..449440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMCNG_RS01985 (THUN1654_03800) sppA 437129..438982 (+) 1854 WP_226692979.1 signal peptide peptidase SppA -
  ACMCNG_RS01990 (THUN1654_03810) folK 439272..439748 (-) 477 WP_226692698.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ACMCNG_RS01995 (THUN1654_03820) pcnB 439752..441023 (-) 1272 WP_412763380.1 polynucleotide adenylyltransferase PcnB -
  ACMCNG_RS02000 (THUN1654_03830) dksA 441365..441802 (-) 438 WP_226692699.1 RNA polymerase-binding protein DksA -
  ACMCNG_RS02005 (THUN1654_03840) rec2 442053..444440 (+) 2388 WP_226692700.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACMCNG_RS02010 (THUN1654_03850) msbA 444499..446247 (+) 1749 WP_374707305.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ACMCNG_RS02015 (THUN1654_03860) lpxK 446423..447412 (+) 990 WP_226692702.1 tetraacyldisaccharide 4'-kinase -
  ACMCNG_RS02020 (THUN1654_03870) - 447414..447596 (+) 183 WP_226692703.1 Trm112 family protein -
  ACMCNG_RS02025 (THUN1654_03880) kdsB 447656..448420 (+) 765 WP_226692704.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 90830.64 Da        Isoelectric Point: 10.0447

>NTDB_id=111170 ACMCNG_RS02005 WP_226692700.1 442053..444440(+) (rec2) [Rodentibacter sp. THUN1654]
MPFNVFTLAISIIFASLSLMFLPDFMLIGWKQMLFCHLAFVLTAVFFYWFKKIFAFRFFIYLNIALLALGYAHSFALDLL
RQADEISVQKQPLIFTIEEVLHQQAYQTVIVRTVLKERLGEQRIFLNWKAKERPFLGETWQGEVLLRPLSGRLNFGGFDR
QKWYFSERIIATGTVKSAVKIKSDFSLREKILQKALQQTEGLSLQGLLIALAFGERAWLDKSTQRIYQQTNTAHLIAISG
LHIGLAMGIGFFLIRLMQFFLPTRFIHPFFPLFFGAILALFYAYLAGFALPTFRAISALLFISCIQMARRYYSAFQLFIL
VVAFLLLWDPLMPLSISFWLSVGAVCCLILWYRYVPFSLFQWRHQPFSQKVRWIMRLFHLQFGLLLLFTPLQLFFFNGIA
LSGFFVNLIAVPFYSFFLVPLILFAILTKGAWSSWRLANELAEGITQIIASFQGNWFTVSFNLSLVLTALCSLIFLLIIY
GIYREKRVTQQNWKIKPARFFTLSTSKSSPQIEFKQMIGVSVSIAVLCLLIGAYRQYQKSLWQLDTLDVGQGLATLIVKE
GRGILYDTGAAWQGGSMAELEILPYLQREGIELDKLILSHDDNDHSGGARAILNAYPHLVLMSSSKKNYGETYRTSCIIG
NNWQWQGISFRVLSPEKSVARADNSDSCVILIDDGKHRILLTGDAEMKNEQIFARTLGKLDVLQVGHHGSKTSTGEFLVA
RTKPDISIISSGRWNPWKFPHSSVTERLTHYKSTVENTALSGQIRVGFYQNKITITAARDAFSPWYARVIGLSKE

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=111170 ACMCNG_RS02005 WP_226692700.1 442053..444440(+) (rec2) [Rodentibacter sp. THUN1654]
ATGCCGTTTAATGTATTTACGTTAGCAATCAGCATTATTTTTGCTTCGCTATCATTGATGTTTTTGCCGGATTTTATGTT
AATCGGCTGGAAACAAATGCTGTTCTGTCATTTAGCGTTCGTTCTGACCGCCGTTTTTTTCTATTGGTTCAAAAAAATAT
TTGCTTTTCGTTTTTTTATCTATCTAAATATCGCGCTTTTAGCCTTGGGTTACGCTCATTCTTTTGCCCTTGATTTATTG
CGACAGGCCGATGAAATCTCCGTTCAAAAACAACCGTTGATTTTTACTATTGAAGAAGTATTACATCAGCAAGCGTATCA
AACGGTCATTGTTCGCACGGTACTAAAAGAAAGGCTGGGTGAACAGCGTATTTTTCTTAACTGGAAAGCAAAGGAACGTC
CTTTTTTAGGGGAAACCTGGCAAGGCGAAGTTCTTCTTCGTCCGCTTTCCGGAAGATTGAATTTCGGTGGGTTTGATCGT
CAGAAATGGTATTTTTCCGAAAGGATTATTGCGACAGGAACGGTAAAAAGTGCGGTCAAAATCAAGAGTGATTTTTCATT
ACGGGAGAAAATATTACAAAAAGCATTGCAACAAACTGAAGGTCTTTCTTTACAAGGTCTATTAATTGCCTTAGCTTTTG
GCGAACGGGCATGGCTTGATAAATCAACACAGAGAATTTATCAGCAAACCAATACTGCACATTTAATTGCTATTTCGGGG
CTACATATCGGTTTGGCAATGGGGATTGGTTTTTTTCTGATTCGCTTAATGCAATTTTTTCTTCCAACCCGTTTTATTCA
TCCGTTTTTTCCCTTGTTCTTTGGGGCGATTTTAGCGTTGTTTTACGCTTACCTTGCAGGATTCGCTCTTCCTACTTTTC
GTGCAATTTCTGCCTTGCTCTTTATCTCTTGCATACAAATGGCTAGGCGATATTATTCTGCTTTTCAACTTTTTATTTTA
GTGGTGGCATTTCTTTTATTATGGGATCCGCTTATGCCGCTTTCCATCAGTTTTTGGCTTTCTGTAGGTGCTGTGTGCTG
TTTAATCCTATGGTATCGTTATGTGCCGTTTTCACTTTTTCAATGGCGTCATCAGCCTTTCTCTCAAAAAGTGCGGTGGA
TAATGCGTTTGTTTCATTTGCAGTTTGGTTTGTTACTGTTGTTCACACCGTTACAGCTTTTCTTTTTTAACGGTATTGCA
TTAAGTGGTTTTTTCGTTAATTTAATTGCCGTACCTTTTTATAGTTTTTTCCTTGTGCCTTTGATTCTATTTGCCATATT
GACTAAAGGAGCGTGGTCCTCTTGGAGATTGGCTAATGAATTGGCAGAAGGAATAACACAAATTATCGCTTCCTTTCAAG
GAAATTGGTTCACGGTATCATTTAATTTATCGCTTGTTTTGACCGCACTTTGTAGTTTGATTTTTCTCTTGATCATTTAT
GGAATTTATCGGGAAAAACGGGTAACGCAACAAAATTGGAAAATAAAACCGGCAAGATTTTTCACATTAAGTACGAGCAA
ATCATCTCCGCAGATTGAGTTTAAACAAATGATCGGTGTTTCGGTAAGTATTGCGGTTTTATGTTTATTGATTGGGGCGT
ATCGGCAGTATCAAAAATCGCTTTGGCAGCTTGATACGTTAGATGTAGGGCAGGGCTTGGCAACGTTAATCGTAAAAGAG
GGTAGAGGCATTTTGTATGATACCGGTGCGGCGTGGCAAGGCGGTTCAATGGCTGAATTGGAAATATTGCCTTATTTGCA
ACGTGAAGGAATTGAGTTGGATAAATTGATTTTAAGTCACGATGATAATGATCATTCCGGTGGTGCGAGAGCAATTTTAA
ATGCTTATCCTCATTTGGTGTTGATGAGTTCATCGAAAAAAAATTACGGTGAAACTTACCGCACTTCCTGTATTATAGGA
AACAACTGGCAATGGCAGGGGATTTCATTTCGTGTGCTTTCTCCTGAAAAATCAGTCGCTCGAGCAGATAATTCAGACTC
TTGCGTGATTTTGATTGATGATGGGAAGCATCGTATTTTGCTAACCGGTGATGCTGAAATGAAAAACGAACAAATTTTTG
CCCGCACTTTGGGCAAACTTGATGTATTGCAAGTAGGACACCACGGGAGTAAAACTTCTACGGGAGAATTTTTAGTTGCC
CGAACCAAACCGGATATTTCGATTATTTCCAGCGGTCGTTGGAATCCTTGGAAATTCCCTCATTCTTCGGTAACGGAGCG
TTTAACGCACTATAAAAGTACGGTAGAAAATACGGCGCTTTCAGGGCAGATTCGGGTCGGGTTTTATCAAAATAAGATAA
CAATCACAGCCGCCAGAGACGCTTTTTCGCCTTGGTATGCGCGAGTGATTGGATTATCAAAGGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(548-731)

Domain of unknown function (DUF4131) (DUF4131)

(29-178)

Competence protein (Competence)

(211-479)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

65.704

100

0.658

Multiple sequence alignment