Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACMCNG_RS00500 Genome accession   NZ_AP038785
Coordinates   108643..109596 (+) Length   317 a.a.
NCBI ID   WP_304621902.1    Uniprot ID   -
Organism   Rodentibacter sp. THUN1654     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 103643..114596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMCNG_RS00480 (THUN1654_00940) accA 104228..105175 (-) 948 WP_226692439.1 acetyl-CoA carboxylase carboxyl transferase subunit alpha -
  ACMCNG_RS00485 (THUN1654_00950) znuB 105264..106049 (-) 786 WP_226692440.1 zinc ABC transporter permease subunit ZnuB -
  ACMCNG_RS00490 (THUN1654_00960) znuC 106049..106852 (-) 804 WP_226692441.1 zinc ABC transporter ATP-binding protein ZnuC -
  ACMCNG_RS00495 (THUN1654_00970) mepM 107027..108487 (+) 1461 WP_226692442.1 murein DD-endopeptidase MepM -
  ACMCNG_RS00500 (THUN1654_00980) ceuB 108643..109596 (+) 954 WP_304621902.1 ABC transporter permease Machinery gene
  ACMCNG_RS00505 (THUN1654_00990) - 109589..110542 (+) 954 WP_226692443.1 iron chelate uptake ABC transporter family permease subunit -
  ACMCNG_RS00510 (THUN1654_01000) - 110559..111326 (+) 768 WP_226692444.1 ABC transporter ATP-binding protein -
  ACMCNG_RS00515 (THUN1654_01010) - 111336..112250 (+) 915 WP_226692445.1 siderophore ABC transporter substrate-binding protein -
  ACMCNG_RS00520 (THUN1654_01020) - 112369..113325 (+) 957 WP_226692446.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34798.05 Da        Isoelectric Point: 10.1189

>NTDB_id=111165 ACMCNG_RS00500 WP_304621902.1 108643..109596(+) (ceuB) [Rodentibacter sp. THUN1654]
MIKRRYLIFLLFVLSVVSLFLGVSSVNLQGLLNFEGNQWQIFAISRVPRLISILIAGASLGICGLVMQQLSRNRFVSPTT
AGTMDSARLGILIVMLFFPSASMLLKTGIAVAVSFLGTLLFMLILSHLKFKDTIFVPLVGIMFGNIISAITAFIAYQQDV
LQNLSGWLQGDFSLVMAGRYELLYFSIPMLAIAYLFANRFSIVGMGKDFAVNLGLNYNLVLYVGLLIVSVVSSIIIISVG
VIPFLGLIIPNIVTLYLGDNLKKVLSHTALLGAIFVLFCDILGRAVIYPYEISINVVVGVFGSGIFLFLLLKRYRNV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=111165 ACMCNG_RS00500 WP_304621902.1 108643..109596(+) (ceuB) [Rodentibacter sp. THUN1654]
ATGATCAAGCGACGTTATCTGATTTTTCTTCTCTTTGTACTTTCGGTTGTTTCACTTTTCCTCGGTGTAAGCTCTGTTAA
TTTACAGGGATTACTCAATTTTGAAGGCAATCAATGGCAGATTTTTGCTATAAGCCGCGTGCCTCGATTAATCAGTATTT
TGATTGCCGGTGCCTCTTTGGGTATCTGCGGCTTGGTTATGCAGCAGTTAAGCAGAAACCGTTTTGTTTCTCCCACAACA
GCAGGTACGATGGACAGTGCCCGTCTCGGTATTTTGATCGTAATGCTATTTTTTCCTTCGGCTTCAATGCTGCTGAAAAC
CGGTATTGCCGTTGCGGTGTCCTTTCTAGGTACATTGTTGTTTATGCTTATTCTTTCCCATTTGAAATTTAAAGATACGA
TTTTTGTGCCGCTTGTGGGGATTATGTTTGGCAATATTATTAGTGCGATTACAGCTTTTATCGCTTATCAGCAAGATGTG
TTACAAAATCTTTCCGGCTGGTTACAAGGGGATTTTTCATTAGTGATGGCAGGGCGGTATGAATTACTTTACTTCAGTAT
TCCTATGTTGGCGATTGCTTATTTATTTGCTAATCGTTTTTCTATTGTGGGAATGGGCAAGGATTTTGCCGTAAATTTAG
GTTTAAATTATAACTTGGTATTGTATGTCGGCTTGTTAATTGTGTCGGTTGTTTCATCTATCATTATTATTTCAGTAGGT
GTGATCCCGTTTCTTGGGCTGATTATTCCCAACATAGTTACGCTTTATCTAGGCGATAATCTAAAAAAGGTGCTTTCTCA
TACTGCTTTGCTCGGTGCCATATTTGTTTTGTTTTGCGATATTTTAGGAAGGGCGGTGATTTACCCTTATGAAATATCCA
TTAATGTGGTCGTGGGAGTATTTGGTAGTGGGATTTTCTTATTCTTATTGTTGAAGCGGTACCGAAATGTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.34

97.476

0.539

Multiple sequence alignment