Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BN49_RS11995 Genome accession   NZ_FO834906
Coordinates   2176256..2176852 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain Kp52.145     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2171256..2181852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN49_RS11975 (BN49_2078) - 2171450..2173207 (-) 1758 WP_016529118.1 Lon protease family protein -
  BN49_RS11980 (BN49_2079) matP 2173393..2173845 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  BN49_RS11985 (BN49_2080) ompA 2173975..2175045 (-) 1071 WP_016529119.1 porin OmpA -
  BN49_RS11990 (BN49_2081) sulA 2175398..2175907 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  BN49_RS11995 (BN49_2083) sxy/tfoX 2176256..2176852 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  BN49_RS12000 (BN49_2084) yccS 2176866..2179001 (-) 2136 WP_016529594.1 YccS family putative transporter -
  BN49_RS12005 (BN49_2085) - 2179019..2179465 (-) 447 WP_004224032.1 YccF domain-containing protein -
  BN49_RS12010 (BN49_2086) helD 2179590..2181644 (+) 2055 WP_046043000.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1111644 BN49_RS11995 WP_004179217.1 2176256..2176852(+) (sxy/tfoX) [Klebsiella pneumoniae strain Kp52.145]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1111644 BN49_RS11995 WP_004179217.1 2176256..2176852(+) (sxy/tfoX) [Klebsiella pneumoniae strain Kp52.145]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment