Detailed information NTG1111398

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ACOB85_RS20910
• Genome accession: NZ_CP184834
• Coordinates: 2858336..2859343 (+)
• Length: 335 a.a.
• NCBI ID: WP_005379543.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain HoVa25
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2853336..2864343

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACOB85_RS20890 (ACOB85_20890)	rplC	2853879..2854508 (-)	630	WP_005379555.1	50S ribosomal protein L3	-
ACOB85_RS20895 (ACOB85_20895)	rpsJ	2854523..2854834 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
ACOB85_RS20900 (ACOB85_20900)	rpmE	2855291..2855512 (-)	222	WP_005379546.1	50S ribosomal protein L31	-
ACOB85_RS20905 (ACOB85_20905)	priA	2855808..2858012 (+)	2205	WP_169628328.1	primosomal protein N'	-
ACOB85_RS20910 (ACOB85_20910)	cytR	2858336..2859343 (+)	1008	WP_005379543.1	DNA-binding transcriptional regulator CytR	Regulator
ACOB85_RS20915 (ACOB85_20915)	ftsN	2859569..2860117 (+)	549	WP_017820300.1	cell division protein FtsN	-
ACOB85_RS20920 (ACOB85_20920)	hslV	2860233..2860784 (+)	552	WP_005383176.1	ATP-dependent protease subunit HslV	-
ACOB85_RS20925 (ACOB85_20925)	hslU	2860808..2862139 (+)	1332	WP_025768349.1	HslU--HslV peptidase ATPase subunit	-
ACOB85_RS20930 (ACOB85_20930)	-	2862762..2863184 (-)	423	WP_213960900.1	DUF805 domain-containing protein	-
ACOB85_RS20935 (ACOB85_20935)	-	2863347..2863694 (-)	348	WP_420788355.1	5-carboxymethyl-2-hydroxymuconate Delta-isomerase	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36892.42 Da
• Isoelectric Point: 6.2447

>NTDB_id=1111398 ACOB85_RS20910 WP_005379543.1 2858336..2859343(+) (cytR) [Vibrio alginolyticus strain HoVa25]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide

• Length: 1008 bp

>NTDB_id=1111398 ACOB85_RS20910 WP_005379543.1 2858336..2859343(+) (cytR) [Vibrio alginolyticus strain HoVa25]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCCTTAATGAATCCAGAGAA
AGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGT
ATTGAAGATGCAGCCATGGAACATGGTTATCTAGTCCTGCTGGGCGATAGCGGACAACAGAAGAAACGCGAAAGCTCTTT
CGTTAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTACCATTCGATGTCAGTAAGCCAG
AGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCTGAACTCGAGCTTCCGACAGTACATATTGATAAC
CTGACCTCTGCATTTGAAGCAGTGAATTACCTGACCCAATTAGGTCATAAACGCATTGCTCAAATCTCTGGACCAGATAC
AGCAATATTGTGTCAGTTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCATCAATAAAGATCCACAATATA
GTGTCATTACTGAGTTTTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCAGAACCACCAACGGCT
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTACCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACCATCTCTCAACCTCGCTATG
AGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTCTGCTTGAA
ACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	98.204	99.701	0.979
cytR	Vibrio cholerae C6706	89.521	99.701	0.893