Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ACOB85_RS16030 Genome accession   NZ_CP184834
Coordinates   1788048..1789469 (+) Length   473 a.a.
NCBI ID   WP_167415153.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain HoVa25     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1783048..1794469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOB85_RS16010 (ACOB85_16010) - 1783529..1784335 (-) 807 WP_420788222.1 adenosylcobinamide-GDP ribazoletransferase -
  ACOB85_RS16015 (ACOB85_16015) cobT 1784335..1785378 (-) 1044 WP_104979038.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  ACOB85_RS16020 (ACOB85_16020) - 1785627..1786316 (+) 690 WP_047100706.1 NAD(P)H-binding protein -
  ACOB85_RS16025 (ACOB85_16025) - 1786517..1787890 (+) 1374 WP_047100707.1 L-cystine transporter -
  ACOB85_RS16030 (ACOB85_16030) sbcB 1788048..1789469 (+) 1422 WP_167415153.1 exodeoxyribonuclease I Machinery gene
  ACOB85_RS16035 (ACOB85_16035) - 1789525..1789899 (+) 375 WP_005377887.1 CidA/LrgA family protein -
  ACOB85_RS16040 (ACOB85_16040) - 1789901..1790578 (+) 678 WP_005385454.1 LrgB family protein -
  ACOB85_RS16045 (ACOB85_16045) cdd 1791008..1791895 (+) 888 WP_005377892.1 cytidine deaminase -
  ACOB85_RS16050 (ACOB85_16050) purT 1792039..1793214 (+) 1176 WP_021033842.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  ACOB85_RS16055 (ACOB85_16055) - 1793287..1793937 (-) 651 WP_021707633.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54416.59 Da        Isoelectric Point: 4.8633

>NTDB_id=1111388 ACOB85_RS16030 WP_167415153.1 1788048..1789469(+) (sbcB) [Vibrio alginolyticus strain HoVa25]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1111388 ACOB85_RS16030 WP_167415153.1 1788048..1789469(+) (sbcB) [Vibrio alginolyticus strain HoVa25]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCGGCTG
ATTATCTTCCGTCTCCTGAAGCTGCACTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCACGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACATTTGTCCGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGGTTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCCGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACGAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCAGAGTCT
ATTGGCATTGATCGCCAACAATGTCTCGCCAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGCAAATTCGATAAAAGTGATGACGTCGATACACAACTTTACGACGGGTTCTTTTCTCCAGCCG
ATCGCGCAGCTATGGATATCATTCGCGAAACCGATCCGAATAATCTTGCTGCATTAGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCACT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.493

100

0.795

Multiple sequence alignment