Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACOB85_RS15110 Genome accession   NZ_CP184834
Coordinates   1570104..1571630 (+) Length   508 a.a.
NCBI ID   WP_420788198.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain HoVa25     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1565104..1576630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOB85_RS15085 (ACOB85_15085) - 1565405..1565725 (+) 321 WP_017634929.1 STAS domain-containing protein -
  ACOB85_RS15090 (ACOB85_15090) - 1565752..1566618 (+) 867 WP_017634930.1 OmpA family protein -
  ACOB85_RS15095 (ACOB85_15095) - 1566615..1568717 (+) 2103 WP_285400087.1 SLBB domain-containing protein -
  ACOB85_RS15100 (ACOB85_15100) - 1568717..1569403 (+) 687 WP_005377635.1 AAA family ATPase -
  ACOB85_RS15105 (ACOB85_15105) - 1569415..1569795 (+) 381 WP_213973186.1 Hpt domain-containing protein -
  ACOB85_RS15110 (ACOB85_15110) luxO 1570104..1571630 (+) 1527 WP_420788198.1 sigma-54-dependent transcriptional regulator Regulator
  ACOB85_RS15115 (ACOB85_15115) - 1571605..1572675 (+) 1071 WP_154204602.1 glycosyltransferase family 4 protein -
  ACOB85_RS15120 (ACOB85_15120) - 1572820..1574004 (+) 1185 WP_042522934.1 glycosyltransferase -
  ACOB85_RS15125 (ACOB85_15125) - 1574016..1575188 (+) 1173 WP_420788199.1 glycosyltransferase -
  ACOB85_RS15130 (ACOB85_15130) - 1575181..1576611 (+) 1431 WP_017820656.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56498.46 Da        Isoelectric Point: 6.0391

>NTDB_id=1111387 ACOB85_RS15110 WP_420788198.1 1570104..1571630(+) (luxO) [Vibrio alginolyticus strain HoVa25]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVSHLPAQLTKKSKVTKTTTPA
HVAQESANIAPITPPPVYTEGLSPSAVEPSITAAELPGTPSSAATSPYFNSDGAIRPMWQVEREAIQNAIAYCDGNVLNA
AVMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=1111387 ACOB85_RS15110 WP_420788198.1 1570104..1571630(+) (luxO) [Vibrio alginolyticus strain HoVa25]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTGAAAGACGAACCTTA
TGACATTTTTCATGTCGAGACAGGTCGCGAAGCGATTCAATTTATTGAAAGAAGCAAACCTCAACTCATCATTCTCGATT
TGAAACTGCCCGACATGTCTGGCGAAGACGTGCTGGATTGGATCAACCAGAATGACATTCCTACGTCCGTTATTATTGCT
ACGGCGCACGGCAGCGTCGACTTAGCCGTTAATCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAGCCCATAAACGC
TGATCGCCTAAAAACATCAGTCGCATTGCACCTCAAACGCGCCAAATTGGAAGATTTGGTGGAAAATATTCAGTCCAAGT
TTGATCGCCACAACTATCACGGATTCATCGGTTCAAGCCTCCCGATGCAGGCGGTATACAAGACCATTGATGCTGTTGCG
CCAACTTCTGCCAGTGTGTTTATTGTGGGAGAAAGCGGCACAGGTAAAGAAGTTTGTGCTGAAGCCGTCCACCGCCAGAG
CGACCGTAAAGACAAGCCTTTTATTGCAATTAACTGTGGGGCTATTCCACGAGATTTGATGGAAAGTGAGATTTTTGGTC
ACGTTAAAGGGGCCTTTACTGGAGCAACAACAGATCGAAAAGGTGCGGCGACGCTGGCACATGGTGGCACGCTTTTTCTT
GATGAGCTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGCTTTCTACAAACGGGCACTTACACCCCTCTTGG
TGGCACTCGAGAAATGAAAGTGGATGTGAGAATCATTTGTGCCACCAACCGAGATCCATTAACAGAAGTAGAAGAAGGTC
GTTTTCGTGAAGACTTATACTACCGTGTGCACGTTATACCTATCGATATGCCACCATTACGTGAACGAGGAAGTGACATC
GTCACGCTTGCTAAGCACTTCTTGACCACTTACGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGCGAAGCTCA
ACATATCATCAAGCATTACGAATGGCCGGGTAATGTAAGGCAACTACAAAACATCATACGTAACATTGTGGTGCTTAATA
ACGACGAAAAAGTCACGGTGAGCCACCTACCCGCTCAACTTACTAAAAAGTCTAAAGTGACGAAAACAACGACGCCTGCG
CATGTTGCTCAAGAGTCAGCAAACATTGCACCAATCACACCACCACCTGTTTATACTGAGGGACTTTCACCTTCTGCGGT
CGAACCGTCGATTACCGCAGCGGAGCTGCCTGGTACACCGTCCTCTGCTGCTACCTCACCGTACTTTAACTCTGATGGAG
CCATTCGTCCTATGTGGCAAGTAGAGCGTGAAGCAATTCAAAACGCAATCGCGTACTGTGATGGCAACGTCCTCAACGCC
GCTGTCATGCTGGAGTTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACA
ATCTTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(458-494)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.899

97.047

0.484

Multiple sequence alignment