Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACOB85_RS12620 Genome accession   NZ_CP184834
Coordinates   1029512..1030918 (+) Length   468 a.a.
NCBI ID   WP_005380768.1    Uniprot ID   A0AAW9BFV3
Organism   Vibrio alginolyticus strain HoVa25     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1024512..1035918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOB85_RS12615 (ACOB85_12615) uvrB 1027191..1029221 (+) 2031 WP_017636056.1 excinuclease ABC subunit UvrB -
  ACOB85_RS12620 (ACOB85_12620) luxO 1029512..1030918 (+) 1407 WP_005380768.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ACOB85_RS12625 (ACOB85_12625) luxU 1030915..1031259 (+) 345 WP_136976695.1 quorum-sensing phosphorelay protein LuxU -
  ACOB85_RS12630 (ACOB85_12630) - 1031398..1032294 (-) 897 WP_005388931.1 YvcK family protein -
  ACOB85_RS12635 (ACOB85_12635) moaA 1032593..1033582 (+) 990 WP_285385566.1 GTP 3',8-cyclase MoaA -
  ACOB85_RS12640 (ACOB85_12640) moaB 1033684..1034196 (+) 513 WP_005388935.1 molybdenum cofactor biosynthesis protein B -
  ACOB85_RS12645 (ACOB85_12645) moaC 1034223..1034702 (+) 480 WP_005380779.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACOB85_RS12650 (ACOB85_12650) moaD 1034699..1034956 (+) 258 WP_017636051.1 molybdopterin synthase sulfur carrier subunit -
  ACOB85_RS12655 (ACOB85_12655) moaE 1034958..1035413 (+) 456 WP_005380781.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52094.70 Da        Isoelectric Point: 6.2547

>NTDB_id=1111385 ACOB85_RS12620 WP_005380768.1 1029512..1030918(+) (luxO) [Vibrio alginolyticus strain HoVa25]
MQQKPEGPKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQSYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFIRFAPDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
SVAKLIEPKAMTASEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=1111385 ACOB85_RS12620 WP_005380768.1 1029512..1030918(+) (luxO) [Vibrio alginolyticus strain HoVa25]
ATGCAACAAAAACCCGAAGGCCCAAAGTCTCGTTACCTTTTAATGGTCGAGGACACCGCATCTGTTGCGGCTCTGTACCG
CTCATACCTGACACCGCTTGGCATAGATATCAATATTGTCGGCACAGGTAGGGATGCCATTGAGAGCCTAAATCATCGAA
TTCCAGATCTTATTTTACTCGATCTCCGTCTGCCAGATATGACGGGGATGGACGTTTTACATGCCGTTAAAAAGAGTCAT
CCCGACGTACCTATAATCTTTATGACCGCTCACGGTTCTATCGATACCGCTGTCGAGGCCATGCGTCATGGCTCACAAGA
CTTTTTAATCAAACCGTGTGAAGCAGACCGTTTACGTGTCACGGTTAACAATGCCATTCGTAAAGCGACCAAGCTAAAAA
ATGAAGCCGATAATCCAGGTAATCAGAGCTATCAGGGGTTTATCGGCAGTAGCCAAACCATGCAGCAGGTTTACCGTACG
ATAGATTCAGCGGCGAGCAGTAAAGCGAGTATTTTTATCACAGGTGAAAGTGGTACTGGTAAAGAGGTATGTGCCGAGGC
TATTCACGCAGCAAGTAAACGTGGTGACAAACCTTTTATTGCAATTAACTGTGCTGCAATTCCAAAAGATTTGATTGAGA
GTGAACTGTTTGGTCACGTAAAAGGGGCCTTTACTGGCGCTGCGAATGATCGTCAAGGGGCAGCTGAGTTAGCGGATGGC
GGCACACTTTTTCTAGATGAGCTTTGTGAGATGGACTTGGATTTACAAACCAAGTTGCTACGATTTATTCAAACGGGCAC
ATTCCAAAAAGTGGGTTCCTCAAAAATGAAGAGCGTGGATGTGCGCTTTGTGTGTGCCACTAACCGTGATCCCTGGAAAG
AGGTACAAGAAGGTCGATTCCGTGAAGATTTGTACTATCGTTTGTATGTCATTCCTTTGCATTTACCGCCTTTACGCGAA
CGAGGCGAAGATGTTATTGAAATTGCATACTCACTGTTAGGTTACATGTCACACGAAGAAGGAAAAAGCTTCATACGTTT
TGCGCCTGATGTCATCGAACGATTCAACAGCTATGAGTGGCCGGGTAACGTTCGTCAGTTACAAAACGTGCTACGCAATA
TCGTTGTTCTAAACAACGGTAAAGAGATTACGTTGGATATGTTACCGCCACCGTTGAATCAACCGCTTGACCGTCCGTCG
TCTGTGGCTAAATTAATTGAGCCGAAAGCGATGACCGCATCTGAGATTATGCCATTATGGATGACGGAAAAAATGGCAAT
CGAGCAAGCGATTGAAGCATGTGATGGCAATATTCCTCGAGCGGCGGGATACCTTGATGTCAGTCCGTCGACGATTTACC
GCAAGTTACAGGCATGGAACGGCAAGGAAGAGCGGCAAAAAGTATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.414

95.94

0.829

Multiple sequence alignment