Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACOB85_RS10405 Genome accession   NZ_CP184834
Coordinates   554475..554993 (+) Length   172 a.a.
NCBI ID   WP_017820391.1    Uniprot ID   A0A2I3C9Z1
Organism   Vibrio alginolyticus strain HoVa25     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 549475..559993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOB85_RS10395 (ACOB85_10395) gshA 552193..553761 (+) 1569 WP_005385430.1 glutamate--cysteine ligase -
  ACOB85_RS10400 (ACOB85_10400) - 553785..554390 (+) 606 WP_005379943.1 hypothetical protein -
  ACOB85_RS10405 (ACOB85_10405) luxS 554475..554993 (+) 519 WP_017820391.1 S-ribosylhomocysteine lyase Regulator
  ACOB85_RS10410 (ACOB85_10410) - 555061..556341 (-) 1281 WP_005379948.1 HlyC/CorC family transporter -
  ACOB85_RS10415 (ACOB85_10415) - 556466..557260 (-) 795 WP_005379950.1 cytochrome C assembly family protein -
  ACOB85_RS10420 (ACOB85_10420) ffh 557485..558867 (+) 1383 WP_005385423.1 signal recognition particle protein -
  ACOB85_RS10425 (ACOB85_10425) rpsP 559077..559325 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  ACOB85_RS10430 (ACOB85_10430) rimM 559355..559903 (+) 549 WP_005379964.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19074.83 Da        Isoelectric Point: 4.8443

>NTDB_id=1111378 ACOB85_RS10405 WP_017820391.1 554475..554993(+) (luxS) [Vibrio alginolyticus strain HoVa25]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLKEAQQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1111378 ACOB85_RS10405 WP_017820391.1 554475..554993(+) (luxS) [Vibrio alginolyticus strain HoVa25]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGTATGAATGCACCCGCTGTACGAGTGGCGAAAACCATGCAGAC
CCCAAAAGGGGATACGATTACTGTTTTCGACTTACGCTTTACTGCGCCAAACAAAGACATTCTTTCTGAAAAAGGTATTC
ACACCCTAGAGCACCTTTATGCAGGCTTTATGCGTAATCACCTAAACGGTGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACAGGTTTTTACATGAGCCTGATTGGCACACCATCAGAGCAGCAAGTCGCAGATGCTTGGATTGCAGC
AATGGAAGATGTGCTGAAGGTAGAAAGTCAGAATAAGATCCCTGAACTTAACGAATACCAATGCGGCACGGCAGCAATGC
ACTCTTTAAAAGAAGCACAACAGATCGCAAAGAACATTTTGGATGCTGGTGTTTCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAGTCGATGTTAAAAGAGTTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3C9Z1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment