Detailed information NTG1111375

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACOB85_RS10285
• Genome accession: NZ_CP184834
• Coordinates: 531913..532899 (+)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain HoVa25
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 526913..537899

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACOB85_RS10250 (ACOB85_10250)	ftsB	526924..527205 (+)	282	WP_005380907.1	cell division protein FtsB	-
ACOB85_RS10255 (ACOB85_10255)	ispD	527207..527914 (+)	708	WP_017821625.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACOB85_RS10260 (ACOB85_10260)	ispF	527928..528404 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACOB85_RS10265 (ACOB85_10265)	truD	528450..529493 (+)	1044	WP_167415443.1	tRNA pseudouridine(13) synthase TruD	-
ACOB85_RS10270 (ACOB85_10270)	surE	529493..530269 (+)	777	WP_167415442.1	5'/3'-nucleotidase SurE	-
ACOB85_RS10275 (ACOB85_10275)	-	530269..530895 (+)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACOB85_RS10280 (ACOB85_10280)	-	530909..531832 (+)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACOB85_RS10285 (ACOB85_10285)	rpoS	531913..532899 (+)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
ACOB85_RS10290 (ACOB85_10290)	mutS	532982..535543 (-)	2562	WP_005380877.1	DNA mismatch repair protein MutS	-
ACOB85_RS10295 (ACOB85_10295)	pncC	535628..536110 (+)	483	WP_005383794.1	nicotinamide-nucleotide amidase	-
ACOB85_RS10300 (ACOB85_10300)	recA	536311..537354 (+)	1044	WP_005380874.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=1111375 ACOB85_RS10285 WP_005380887.1 531913..532899(+) (rpoS) [Vibrio alginolyticus strain HoVa25]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=1111375 ACOB85_RS10285 WP_005380887.1 531913..532899(+) (rpoS) [Vibrio alginolyticus strain HoVa25]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854