Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   ACOB85_RS06640 Genome accession   NZ_CP184833
Coordinates   1461327..1462424 (+) Length   365 a.a.
NCBI ID   WP_005385634.1    Uniprot ID   A0AAW9BFR8
Organism   Vibrio alginolyticus strain HoVa25     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1456327..1467424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOB85_RS06615 (ACOB85_06615) - 1457642..1458985 (-) 1344 WP_025767935.1 MATE family efflux transporter -
  ACOB85_RS06620 (ACOB85_06620) - 1459107..1459421 (-) 315 WP_005373603.1 DUF496 family protein -
  ACOB85_RS06625 (ACOB85_06625) - 1459642..1459866 (+) 225 WP_005385630.1 hypothetical protein -
  ACOB85_RS06630 (ACOB85_06630) - 1460032..1460682 (+) 651 WP_005373594.1 YceH family protein -
  ACOB85_RS06635 (ACOB85_06635) - 1460679..1460996 (+) 318 WP_053304534.1 GIY-YIG nuclease family protein -
  ACOB85_RS06640 (ACOB85_06640) luxP 1461327..1462424 (+) 1098 WP_005385634.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  ACOB85_RS06645 (ACOB85_06645) luxQ 1462424..1465000 (+) 2577 WP_017635176.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  ACOB85_RS06650 (ACOB85_06650) slyA 1465296..1465751 (+) 456 WP_017635177.1 transcriptional regulator SlyA -
  ACOB85_RS06655 (ACOB85_06655) - 1465787..1466845 (+) 1059 WP_395231884.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41587.05 Da        Isoelectric Point: 5.9503

>NTDB_id=1111362 ACOB85_RS06640 WP_005385634.1 1461327..1462424(+) (luxP) [Vibrio alginolyticus strain HoVa25]
MKKALVFSLISMAAFAPNVQATQVLNGYWAYQEFLDQFPQQKQLTSALAEVVRETPVPVAKDKKRPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLDIDYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSKKTKLILQNI
TTPVRDWEHHQPFLYVGFDHAEGSRELAVEFGKRFPKHSHYSVLYFSEGYISDIRGNTFINQVNRDNQFELQSAYYTKAT
KQSGYEAAKASLEKYPDVDFIYACSTDVALGAVDALKELGRDDVMINGWGGGSAELEALSKGELDVTVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=1111362 ACOB85_RS06640 WP_005385634.1 1461327..1462424(+) (luxP) [Vibrio alginolyticus strain HoVa25]
ATGAAAAAAGCGTTAGTATTCTCCCTGATTTCAATGGCCGCTTTTGCGCCGAATGTGCAGGCCACCCAAGTTCTTAATGG
GTATTGGGCATATCAAGAGTTTTTAGACCAGTTTCCACAACAGAAGCAGCTAACTAGTGCGTTGGCTGAAGTGGTAAGAG
AAACCCCTGTACCCGTAGCAAAAGACAAGAAGCGTCCACTGAAAATTTCTGTTGTTTATCCAGGGCAGCAGATCTCTGAT
TATTGGATTCGAAACATCGACGCGTTTGAAAAACGCCTAGATAAGCTTGATATCGACTATCAACTAAATCAAGTGTTTAC
TCGTCCTAATGCAGATATAAAGCAGCAAAGTTTGTCTTTAATGGAGGCGCTGAAAAGCAACTCCGATTACTTGATCTTTA
CTCTAGATACCACAAGACATCGTAAGTTTGTTGAGCATGTCTTAGACTCAAAGAAAACCAAGTTAATCTTACAAAATATC
ACCACACCTGTTAGGGATTGGGAGCATCATCAGCCGTTTCTTTATGTTGGTTTCGACCACGCAGAAGGAAGTCGTGAATT
GGCCGTTGAGTTTGGCAAGCGTTTCCCTAAACATAGCCACTATAGTGTTCTCTATTTCTCGGAGGGCTACATTAGTGACA
TCAGAGGCAACACTTTTATCAACCAAGTGAACCGCGATAACCAGTTTGAACTACAATCTGCTTACTACACCAAAGCAACA
AAGCAATCTGGGTATGAAGCTGCAAAAGCCAGTTTGGAGAAGTATCCGGACGTTGATTTCATTTACGCGTGTTCTACCGA
TGTAGCATTAGGTGCTGTTGACGCTCTTAAAGAGTTAGGTCGTGACGATGTCATGATCAATGGTTGGGGCGGCGGTTCAG
CAGAGTTAGAGGCGCTTTCTAAAGGGGAGTTAGACGTTACCGTTATGCGTATGAACGATGATACAGGTATTGCAATGGCT
GAGGCCATTAAGTGGGATTTAGAAGGAAAGCCAGTTCCCACCGTTTACTCTGGTGATTTTGAAGTCGTTACCAAATCGGA
CTCTCCAGAAAGAATTGAAGCATTAAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644

Multiple sequence alignment