Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   IR04_RS14485 Genome accession   NZ_CP009042
Coordinates   2069242..2069856 (-) Length   204 a.a.
NCBI ID   WP_000580359.1    Uniprot ID   Q9KR01
Organism   Vibrio cholerae O1 biovar El Tor strain FJ147     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2064242..2074856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IR04_RS14460 (IR04_14370) ybgE 2064552..2064869 (-) 318 WP_001286617.1 cyd operon protein YbgE -
  IR04_RS14465 (IR04_14375) cydX 2064862..2064969 (-) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  IR04_RS14470 (IR04_14380) cydB 2064982..2066118 (-) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  IR04_RS14475 (IR04_14385) cydA 2066136..2067722 (-) 1587 WP_000568056.1 cytochrome ubiquinol oxidase subunit I -
  IR04_RS14480 (IR04_14390) ruvB 2068181..2069186 (-) 1006 Protein_1786 Holliday junction branch migration DNA helicase RuvB -
  IR04_RS14485 (IR04_14395) ruvA 2069242..2069856 (-) 615 WP_000580359.1 Holliday junction branch migration protein RuvA Machinery gene
  IR04_RS14490 (IR04_14400) ruvC 2069953..2070474 (-) 522 WP_000111361.1 crossover junction endodeoxyribonuclease RuvC -
  IR04_RS14495 (IR04_14405) cysS 2070562..2071941 (-) 1380 WP_000913180.1 cysteine--tRNA ligase -
  IR04_RS14500 (IR04_14410) - 2072087..2072581 (+) 495 WP_000631302.1 peptidylprolyl isomerase -
  IR04_RS14505 (IR04_14415) lpxH 2072622..2073362 (+) 741 WP_000557000.1 UDP-2,3-diacylglucosamine diphosphatase -
  IR04_RS14510 (IR04_14420) - 2073458..2074672 (+) 1215 WP_001881603.1 EAL and HDOD domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22008.70 Da        Isoelectric Point: 5.0954

>NTDB_id=111135 IR04_RS14485 WP_000580359.1 2069242..2069856(-) (ruvA) [Vibrio cholerae O1 biovar El Tor strain FJ147]
MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVSERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=111135 IR04_RS14485 WP_000580359.1 2069242..2069856(-) (ruvA) [Vibrio cholerae O1 biovar El Tor strain FJ147]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAGTTACCTCCTCAAATTTTGATTGAGGTCGGTGGTATTGGCTATGA
AGTGCAAATGCCGATGAGCTGTATTTATGAACTGCCGAATATTGGGGAAGAAGCCATCATTTATACCCACTTTGTAGTTC
GAGAAGATGCACAGCTACTTTATGGCTTTAATACCGTTAGCGAACGCGCTCTGTTTCGTGAAGTAATCAAAGCCAATGGC
GTAGGGCCGAAAATGGGGCTTGCGATCCTCTCTGGCATGACAGCCAATCAGTTTGTGACTTGTGTGGAAAAAGAAGATAT
CTCTACCCTCATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTGGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGACCTCTTTACACCTGCAACCGATGCGGCCCCTGTCGATTCTACGCCCGTGATTGCTCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAGCCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTGGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATTCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KR01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363

Multiple sequence alignment