Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACNR9V_RS15665 Genome accession   NZ_CP184786
Coordinates   2974888..2976702 (-) Length   604 a.a.
NCBI ID   WP_003252325.1    Uniprot ID   A0AB38R177
Organism   Parageobacillus thermoglucosidasius strain W-36     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2969888..2981702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR9V_RS15630 (ACNR9V_15630) - 2970667..2971299 (-) 633 WP_013401439.1 GTP pyrophosphokinase -
  ACNR9V_RS15635 (ACNR9V_15635) - 2971316..2971690 (-) 375 WP_013401440.1 hypothetical protein -
  ACNR9V_RS15640 (ACNR9V_15640) - 2971820..2972410 (+) 591 WP_420768364.1 CYTH domain-containing protein -
  ACNR9V_RS15645 (ACNR9V_15645) - 2972410..2973012 (+) 603 WP_013401442.1 lytic transglycosylase domain-containing protein -
  ACNR9V_RS15650 (ACNR9V_15650) - 2973118..2973531 (+) 414 WP_013401443.1 globin -
  ACNR9V_RS15655 (ACNR9V_15655) spxH 2973524..2974417 (+) 894 WP_003252320.1 ClpXP adapter protein SpxH -
  ACNR9V_RS15660 (ACNR9V_15660) - 2974673..2974867 (+) 195 WP_003252322.1 hypothetical protein -
  ACNR9V_RS15665 (ACNR9V_15665) pepF 2974888..2976702 (-) 1815 WP_003252325.1 oligoendopeptidase F Regulator
  ACNR9V_RS15670 (ACNR9V_15670) - 2976784..2977872 (-) 1089 Protein_3054 competence protein CoiA -
  ACNR9V_RS15675 (ACNR9V_15675) cls 2978140..2979648 (-) 1509 WP_338204625.1 cardiolipin synthase -
  ACNR9V_RS15680 (ACNR9V_15680) mecA 2979727..2980404 (-) 678 WP_125010387.1 adaptor protein MecA -
  ACNR9V_RS15685 (ACNR9V_15685) - 2980620..2981291 (+) 672 WP_013401446.1 TerC family protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 70159.31 Da        Isoelectric Point: 5.0109

>NTDB_id=1111302 ACNR9V_RS15665 WP_003252325.1 2974888..2976702(-) (pepF) [Parageobacillus thermoglucosidasius strain W-36]
MDEKKTKKSLPLRSEIPVEETWRLEDIFPTDEAWEQEFQEVKKMIPKLSDYQGRLGESADTLYEALQYQDKISMRLGKLY
TYAHMRYDQDTTNAFYQGLNDRATSLYSEASSAMAFIVPEILAIDEAKLRAFLEEKKELKLYEHALDEINRQRPHVLSAE
EEAILAQAAEVMQASSTTFGMLNNADLTFPTIIDENGEEVEVTHGRFIRFLESTDRRVRRDAFKAVYETYEKYKNTFAST
LAGAVKKDNFFARVRRYKSAREAALSNNNIPESVYDNLIETIHEHLPLLHRYVRLRKKVLGLDELHMYDLYTPLVQDVKM
EVTYEEAKEYMLKGLAPLGDEYIRIVKEGLENRWVDVRENKGKRSGAYSSGAYGTNPYILLNWQDNVNNLFTLVHEFGHS
VHSYYTRKTQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDEKKRLYLLNYYLEGFRGTVFRQTMFAEFEHMIHIKAQ
EGEALTADSLTSMYYELNKKYFGDDIVVDKEIGLEWARIPHFYYNYYVYQYATGFSAATALSRQILEEGEPAVKRYIEFL
KAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLEEMEQLLS

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=1111302 ACNR9V_RS15665 WP_003252325.1 2974888..2976702(-) (pepF) [Parageobacillus thermoglucosidasius strain W-36]
ATGGATGAAAAGAAAACAAAAAAATCGTTACCATTGCGAAGTGAAATTCCTGTTGAAGAAACGTGGCGTTTAGAGGACAT
TTTCCCAACGGATGAAGCATGGGAGCAAGAATTTCAAGAAGTGAAAAAAATGATTCCGAAATTATCGGATTATCAAGGAA
GGCTGGGGGAATCGGCAGATACGTTATACGAAGCACTGCAATACCAAGATAAGATATCCATGCGTCTTGGCAAGCTGTAT
ACATATGCGCATATGCGCTATGACCAAGATACGACCAACGCTTTTTATCAAGGGCTGAACGATCGAGCGACAAGCCTTTA
CAGCGAAGCGTCAAGCGCGATGGCATTTATCGTGCCGGAAATTTTGGCGATCGATGAGGCGAAATTGCGTGCGTTTTTAG
AAGAGAAAAAAGAATTAAAGCTGTATGAACACGCTTTAGATGAAATTAACCGCCAGCGCCCGCATGTGTTGTCCGCCGAA
GAAGAGGCGATTCTGGCCCAAGCGGCAGAAGTCATGCAAGCATCTTCGACGACATTCGGCATGCTGAATAACGCCGATTT
AACGTTCCCGACGATTATCGATGAAAATGGGGAAGAAGTGGAAGTAACGCATGGCCGTTTTATTCGCTTTTTGGAAAGCA
CGGACCGCCGCGTGCGGCGCGATGCGTTTAAAGCGGTATATGAGACGTACGAAAAGTATAAAAACACATTTGCCAGCACG
CTCGCCGGCGCGGTGAAAAAAGACAACTTTTTCGCGCGCGTCCGCCGCTATAAATCGGCGCGGGAAGCGGCGTTAAGCAA
TAATAACATCCCTGAAAGTGTATACGATAATTTGATTGAAACGATTCATGAACATTTGCCGCTGTTGCACCGCTACGTTC
GTTTGCGCAAAAAAGTGCTTGGGCTTGACGAATTGCACATGTATGATTTATACACCCCGCTTGTGCAAGATGTGAAAATG
GAAGTAACGTATGAAGAAGCGAAAGAATACATGTTAAAAGGGCTTGCTCCGCTCGGCGACGAATATATTCGCATCGTCAA
GGAAGGCCTGGAAAACCGCTGGGTTGACGTGCGCGAAAACAAGGGAAAACGAAGCGGTGCTTATTCGTCAGGAGCGTACG
GAACAAATCCGTATATTTTGCTTAATTGGCAAGATAACGTCAATAATTTGTTTACACTGGTCCACGAATTCGGCCATTCT
GTGCATAGCTATTACACGCGCAAAACGCAGCCGTATCCGTATGGAAATTATTCGATTTTTGTCGCTGAAGTTGCATCGAC
ATGCAACGAAGCGCTGTTAAATGATTATTTATTAAAAACGATCGATGACGAGAAAAAACGGTTATATTTGCTTAACTATT
ATTTGGAAGGGTTCCGCGGAACGGTCTTCCGCCAAACGATGTTTGCCGAGTTTGAACATATGATTCATATTAAGGCGCAG
GAAGGCGAAGCGCTTACAGCGGATTCATTGACTTCCATGTATTACGAATTAAACAAAAAATATTTTGGCGATGATATTGT
TGTCGATAAGGAAATCGGATTAGAATGGGCGCGTATTCCGCATTTTTACTACAACTATTATGTTTATCAATACGCAACCG
GCTTTAGCGCGGCGACCGCATTAAGCAGACAAATATTAGAAGAAGGGGAGCCGGCCGTGAAGCGCTATATCGAGTTTTTA
AAAGCAGGCAGCTCCGACTATCCGATTGAAGTGTTGAAAAAAGCGGGAGTGGATATGACGAGCGCGGAGCCGATCCGCCA
GGCTTGCCAAGTATTCGCAGAAAAACTGGAAGAAATGGAACAGCTATTGTCGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.931

97.848

0.498

Multiple sequence alignment