Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   IR04_RS12310 Genome accession   NZ_CP009042
Coordinates   1569721..1570101 (-) Length   126 a.a.
NCBI ID   WP_000045526.1    Uniprot ID   Q6BBL2
Organism   Vibrio cholerae O1 biovar El Tor strain FJ147     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1564721..1575101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IR04_RS12290 (IR04_12200) - 1564887..1566293 (+) 1407 WP_000545341.1 MDR family MFS transporter -
  IR04_RS12295 (IR04_12205) - 1566449..1567963 (+) 1515 WP_000411504.1 deoxyribodipyrimidine photo-lyase -
  IR04_RS12300 (IR04_12210) - 1568109..1568423 (+) 315 WP_000312387.1 multidrug efflux SMR transporter -
  IR04_RS12305 (IR04_12215) - 1568478..1569713 (-) 1236 WP_000621946.1 methyl-accepting chemotaxis protein -
  IR04_RS12310 (IR04_12220) pilL-C 1569721..1570101 (-) 381 WP_000045526.1 response regulator Machinery gene
  IR04_RS12315 (IR04_12225) - 1570094..1570354 (-) 261 WP_001143862.1 hypothetical protein -
  IR04_RS12320 (IR04_12230) - 1570344..1572617 (-) 2274 WP_001178898.1 chemotaxis protein CheA -
  IR04_RS12325 (IR04_12235) - 1572626..1572997 (-) 372 WP_000757478.1 response regulator -
  IR04_RS12330 (IR04_12240) - 1572997..1573842 (-) 846 WP_001002907.1 protein-glutamate O-methyltransferase CheR -
  IR04_RS12335 (IR04_12245) - 1573853..1574509 (-) 657 WP_000974695.1 HEAT repeat domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13674.04 Da        Isoelectric Point: 9.8959

>NTDB_id=111130 IR04_RS12310 WP_000045526.1 1569721..1570101(-) (pilL-C) [Vibrio cholerae O1 biovar El Tor strain FJ147]
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS

Nucleotide


Download         Length: 381 bp        

>NTDB_id=111130 IR04_RS12310 WP_000045526.1 1569721..1570101(-) (pilL-C) [Vibrio cholerae O1 biovar El Tor strain FJ147]
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6BBL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

39.2

99.206

0.389

Multiple sequence alignment