Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   ACNR9V_RS02745 Genome accession   NZ_CP184786
Coordinates   541666..542613 (+) Length   315 a.a.
NCBI ID   WP_013876287.1    Uniprot ID   A0AAN1D5D4
Organism   Parageobacillus thermoglucosidasius strain W-36     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 536666..547613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR9V_RS02720 (ACNR9V_02720) - 537048..537929 (+) 882 WP_013400047.1 branched-chain amino acid ABC transporter permease -
  ACNR9V_RS02725 (ACNR9V_02725) - 537942..539006 (+) 1065 WP_420768703.1 branched-chain amino acid ABC transporter permease -
  ACNR9V_RS02730 (ACNR9V_02730) - 539003..539779 (+) 777 WP_420768704.1 ABC transporter ATP-binding protein -
  ACNR9V_RS02735 (ACNR9V_02735) - 539780..540526 (+) 747 WP_420768705.1 ABC transporter ATP-binding protein -
  ACNR9V_RS02740 (ACNR9V_02740) - 540645..541211 (-) 567 WP_003248207.1 FAD-dependent oxidoreductase -
  ACNR9V_RS02745 (ACNR9V_02745) ceuB 541666..542613 (+) 948 WP_013876287.1 ABC transporter permease Machinery gene
  ACNR9V_RS02750 (ACNR9V_02750) - 542606..543556 (+) 951 WP_420768706.1 iron chelate uptake ABC transporter family permease subunit -
  ACNR9V_RS02755 (ACNR9V_02755) - 543550..544308 (+) 759 WP_003248213.1 ABC transporter ATP-binding protein -
  ACNR9V_RS02760 (ACNR9V_02760) - 544431..545390 (+) 960 WP_420768707.1 siderophore ABC transporter substrate-binding protein -
  ACNR9V_RS02765 (ACNR9V_02765) - 545637..546200 (+) 564 WP_256833330.1 biotin transporter BioY -
  ACNR9V_RS02770 (ACNR9V_02770) bioD 546200..546919 (+) 720 WP_003248217.1 dethiobiotin synthase -

Sequence


Protein


Download         Length: 315 a.a.        Molecular weight: 34581.87 Da        Isoelectric Point: 9.6176

>NTDB_id=1111279 ACNR9V_RS02745 WP_013876287.1 541666..542613(+) (ceuB) [Parageobacillus thermoglucosidasius strain W-36]
MKKLFILFVILAVASLFIGVQHISLADLLMLKADDVEVLIISRIPRLISIIIAGASMSICGLIMQQLSQNKFVSPTTAGT
MDCARLGILVSLILFASAGPLLKVTIAFLFAFAGTMIFMRILEKVKYKDAIFIPLVGLMFGNIISSMTTFFAYKYNLIQS
ISSWLHGDFSMIIKGRYELLYLSVPLMIVAYMYANRFTIAGMGEEIATNLGLHYRSIVNVGLIIVAATSSVVVLTVGTLP
FLGLIIPNLVTLYYGDHLEKVLPLTALSGAIFVLACDIFGRVVIYPYEIPIGLTVGVIGSGVFLYLLVRRRKQYV

Nucleotide


Download         Length: 948 bp        

>NTDB_id=1111279 ACNR9V_RS02745 WP_013876287.1 541666..542613(+) (ceuB) [Parageobacillus thermoglucosidasius strain W-36]
ATGAAAAAGCTGTTTATATTATTCGTCATATTAGCAGTTGCATCTTTATTTATCGGTGTCCAGCATATTTCACTTGCCGA
TTTGCTGATGTTGAAAGCGGATGACGTAGAAGTATTAATAATCAGCCGGATTCCGCGATTGATCAGCATTATTATTGCGG
GTGCCAGCATGAGTATTTGCGGGCTAATTATGCAACAGTTAAGCCAAAATAAGTTTGTCTCGCCAACGACGGCGGGGACG
ATGGATTGCGCAAGGTTAGGAATTTTAGTGTCATTGATTTTGTTCGCTTCCGCAGGTCCGCTGCTGAAAGTTACGATCGC
ATTTTTATTCGCTTTTGCCGGTACGATGATTTTTATGAGAATACTTGAAAAAGTGAAATATAAAGACGCCATTTTTATTC
CGCTTGTCGGTTTAATGTTTGGCAATATCATCAGTTCCATGACAACATTTTTCGCGTATAAGTACAATTTAATCCAATCC
ATTTCGTCATGGCTGCATGGCGATTTTTCCATGATTATAAAAGGGCGGTATGAACTGCTTTACTTAAGTGTTCCGCTTAT
GATTGTCGCTTATATGTATGCGAACCGTTTTACGATAGCAGGAATGGGAGAAGAAATCGCGACAAATTTAGGCCTTCATT
ATCGGTCCATCGTCAATGTCGGATTAATCATCGTGGCTGCTACTTCTTCTGTTGTGGTGCTGACGGTCGGGACACTGCCG
TTTTTAGGATTGATTATTCCAAACCTTGTCACATTATATTATGGAGATCATTTAGAGAAAGTCCTGCCTCTGACGGCATT
GTCAGGAGCAATTTTCGTGTTGGCTTGCGATATTTTCGGGCGCGTCGTTATTTATCCGTATGAAATCCCGATCGGTTTGA
CGGTAGGAGTCATTGGCAGCGGCGTATTTTTGTATTTGCTAGTAAGGAGAAGAAAGCAATATGTCTAA

Domains


Predicted by InterproScan.

(7-309)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.305

98.73

0.546


Multiple sequence alignment