Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACOGJJ_RS05100 Genome accession   NZ_CP184769
Coordinates   1004424..1004747 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain JG8     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 999424..1009747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOGJJ_RS05075 (ACOGJJ_05075) - 999736..1001022 (+) 1287 WP_000247031.1 D-alanyl-D-alanine carboxypeptidase family protein -
  ACOGJJ_RS05080 (ACOGJJ_05080) sipW 1001213..1001782 (+) 570 WP_000767792.1 signal peptidase I SipW -
  ACOGJJ_RS05085 (ACOGJJ_05085) - 1001843..1002430 (+) 588 WP_000172852.1 CalY family protein -
  ACOGJJ_RS05090 (ACOGJJ_05090) - 1002565..1003371 (+) 807 WP_420729206.1 DUF4047 domain-containing protein -
  ACOGJJ_RS05095 (ACOGJJ_05095) calY 1003758..1004351 (+) 594 WP_071741057.1 biofilm matrix protein CalY -
  ACOGJJ_RS05100 (ACOGJJ_05100) sinR 1004424..1004747 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  ACOGJJ_RS05105 (ACOGJJ_05105) - 1004827..1004961 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  ACOGJJ_RS05110 (ACOGJJ_05110) inhA1 1005304..1007694 (+) 2391 WP_071741058.1 M6 family metalloprotease immune inhibitor InhA1 -
  ACOGJJ_RS05115 (ACOGJJ_05115) - 1007866..1009233 (+) 1368 WP_071741059.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=1111175 ACOGJJ_RS05100 WP_000578885.1 1004424..1004747(-) (sinR) [Bacillus cereus strain JG8]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=1111175 ACOGJJ_RS05100 WP_000578885.1 1004424..1004747(-) (sinR) [Bacillus cereus strain JG8]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment