Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACODQR_RS04975 Genome accession   NZ_CP184740
Coordinates   1021137..1021766 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain LTE950     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1016137..1026766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACODQR_RS04955 (ACODQR_04955) ycbZ 1016538..1018298 (-) 1761 WP_000156518.1 AAA family ATPase -
  ACODQR_RS04960 (ACODQR_04960) matP 1018484..1018936 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACODQR_RS04965 (ACODQR_04965) ompA 1019012..1020052 (-) 1041 WP_000750416.1 porin OmpA -
  ACODQR_RS04970 (ACODQR_04970) sulA 1020409..1020918 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACODQR_RS04975 (ACODQR_04975) sxy/tfoX 1021137..1021766 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACODQR_RS04980 (ACODQR_04980) yccS 1021729..1023891 (-) 2163 WP_000875061.1 YccS family putative transporter -
  ACODQR_RS04985 (ACODQR_04985) yccF 1023901..1024347 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACODQR_RS04990 (ACODQR_04990) helD 1024470..1026524 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1111015 ACODQR_RS04975 WP_000839153.1 1021137..1021766(+) (sxy/tfoX) [Escherichia coli strain LTE950]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1111015 ACODQR_RS04975 WP_000839153.1 1021137..1021766(+) (sxy/tfoX) [Escherichia coli strain LTE950]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment