Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACOH25_RS11690 Genome accession   NZ_CP184738
Coordinates   2562198..2563571 (+) Length   457 a.a.
NCBI ID   WP_331694516.1    Uniprot ID   -
Organism   Pandoraea sputorum strain whet-A341     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2557198..2568571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOH25_RS11670 - 2557442..2558557 (+) 1116 WP_331694515.1 DUF1853 family protein -
  ACOH25_RS11675 thiD 2558630..2559472 (-) 843 WP_150777631.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACOH25_RS11680 lplT 2559474..2560766 (-) 1293 WP_420538392.1 lysophospholipid transporter LplT -
  ACOH25_RS11685 alr 2561105..2562175 (+) 1071 WP_150659227.1 alanine racemase -
  ACOH25_RS11690 radA 2562198..2563571 (+) 1374 WP_331694516.1 DNA repair protein RadA Machinery gene
  ACOH25_RS11695 - 2563641..2564342 (-) 702 WP_322882010.1 hypothetical protein -
  ACOH25_RS11700 - 2564419..2566359 (-) 1941 WP_039398768.1 ATP-binding cassette domain-containing protein -
  ACOH25_RS11705 cls 2566572..2567999 (-) 1428 WP_150659230.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48207.41 Da        Isoelectric Point: 6.9985

>NTDB_id=1111007 ACOH25_RS11690 WP_331694516.1 2562198..2563571(+) (radA) [Pandoraea sputorum strain whet-A341]
MAKAKTVYICTECGGQTPKWAGQCPNCNGWNTLVESVAEASTGHRYQSLAKSTPIRKLAEIEASDVPRFSSGVSEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAHLARERRALYLSGEESGAQIALRAQRLGLGAAGEGGGELDLLAEIQLEKIL
GAIESEKPDVVVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRTAKQSGVTVIMVGHVTKEGSLAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAFKNRFGAVNELGVFAMTEKGLRGVANPSALFLSQHEQSVPGSCVLVTQEGTRPLLVEVQALVDTAQV
PNPRRLAVGLEQNRLAMLLAVMHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSLRNKPLPRGIVAFGEVGLA
GEIRPSPRGQDRLKEAAKLGFSIAIIPKANAPKQPIDGLEVHAVDRLEQAISVVAGL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1111007 ACOH25_RS11690 WP_331694516.1 2562198..2563571(+) (radA) [Pandoraea sputorum strain whet-A341]
ATGGCTAAAGCCAAGACCGTCTATATCTGTACCGAATGCGGTGGCCAGACCCCCAAGTGGGCTGGCCAGTGTCCTAATTG
CAATGGCTGGAATACGCTCGTCGAATCGGTGGCGGAAGCGTCTACAGGTCACCGCTATCAATCGCTGGCCAAGAGCACGC
CGATTCGCAAGCTGGCGGAAATCGAAGCCTCTGATGTACCGCGTTTTTCCAGCGGCGTGAGCGAATTCGATCGCGTGCTG
GGCGGAGGTCTCGTCGCGGGCGGTGTGGTGTTGATCGGCGGTGACCCGGGGATCGGCAAGTCGACGCTGCTGCTGCAATC
GCTCGCGCATCTCGCGCGTGAGCGTCGGGCGTTGTATTTGAGCGGCGAAGAGTCCGGCGCGCAGATTGCGTTGCGTGCGC
AGCGGCTCGGCCTTGGGGCGGCTGGCGAGGGCGGTGGCGAACTCGATCTGCTCGCCGAAATCCAGCTTGAGAAGATTCTC
GGTGCGATCGAATCGGAAAAACCCGACGTCGTCGTCATCGACTCGATTCAGACGATCTATTCCGAAGCGCTGACGTCGGC
CCCGGGATCGGTCGCGCAAGTGCGAGAGTGCGCAGCGCAACTGACGCGCACCGCCAAGCAGAGTGGCGTGACGGTCATCA
TGGTCGGCCACGTGACGAAGGAAGGTAGTCTCGCCGGGCCACGCGTGTTGGAACACATTGTGGACACGGTGCTTTACTTC
GAAGGCGATACGCATTCGTCGTATCGTCTGGTGCGCGCGTTCAAGAACCGCTTCGGCGCTGTGAATGAGCTGGGCGTGTT
TGCAATGACGGAAAAGGGGTTGCGTGGCGTGGCCAACCCGTCGGCGCTCTTCCTCTCGCAGCATGAGCAAAGCGTGCCTG
GTTCGTGTGTGCTGGTGACGCAGGAGGGCACACGGCCGCTGCTCGTCGAAGTGCAGGCGCTGGTCGATACTGCGCAGGTG
CCGAATCCGCGACGTCTGGCCGTGGGTCTGGAGCAGAACCGCCTGGCCATGTTGCTGGCGGTGATGCATCGTCATGCGGG
CATCGCCTGTTTCGATCAGGACGTGTTTCTGAATGCCGTCGGCGGTGTGAAGATTACCGAACCGGCTGCCGACCTGGCGG
TGTTGCTCGCGATCCATTCGTCATTGCGCAACAAACCGCTGCCACGAGGCATCGTGGCGTTCGGGGAAGTGGGGCTTGCC
GGGGAAATCCGGCCGAGTCCGCGCGGTCAGGATCGTCTCAAAGAGGCGGCTAAGCTGGGCTTCTCGATTGCGATCATTCC
GAAGGCAAATGCGCCGAAGCAGCCGATCGACGGGCTGGAGGTCCATGCCGTCGACCGTCTGGAACAAGCCATCTCGGTGG
TGGCAGGACTGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.827

100

0.501
  radA Streptococcus pneumoniae Rx1

48.837

94.092

0.46
  radA Streptococcus pneumoniae D39

48.837

94.092

0.46
  radA Streptococcus pneumoniae R6

48.837

94.092

0.46
  radA Streptococcus pneumoniae TIGR4

48.837

94.092

0.46
  radA Streptococcus mitis SK321

48.837

94.092

0.46
  radA Streptococcus mitis NCTC 12261

48.837

94.092

0.46

Multiple sequence alignment