Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACOH24_RS02870 Genome accession   NZ_CP184737
Coordinates   612352..613842 (-) Length   496 a.a.
NCBI ID   WP_039395518.1    Uniprot ID   A0A239S8W9
Organism   Pandoraea sputorum strain whet-A408     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 607352..618842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOH24_RS02840 mutY 607354..608511 (+) 1158 WP_331692392.1 A/G-specific adenine glycosylase -
  ACOH24_RS02845 rapZ 608528..609400 (-) 873 WP_039395504.1 RNase adapter RapZ -
  ACOH24_RS02850 - 609592..609924 (-) 333 WP_039395507.1 PsiF family protein -
  ACOH24_RS02855 hprK 610107..611072 (-) 966 WP_039395509.1 HPr(Ser) kinase/phosphatase -
  ACOH24_RS02860 ptsN 611163..611618 (-) 456 WP_039395512.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ACOH24_RS02865 hpf 611854..612210 (-) 357 WP_039395515.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACOH24_RS02870 rpoN/rpoN1 612352..613842 (-) 1491 WP_039395518.1 RNA polymerase factor sigma-54 Machinery gene
  ACOH24_RS02875 lptB 613936..614706 (-) 771 WP_039402130.1 LPS export ABC transporter ATP-binding protein -
  ACOH24_RS02880 lptA 614741..615433 (-) 693 WP_052252464.1 lipopolysaccharide transport periplasmic protein LptA -
  ACOH24_RS02885 lptC 615430..616107 (-) 678 WP_150661075.1 LPS export ABC transporter periplasmic protein LptC -
  ACOH24_RS02890 - 616132..616617 (-) 486 WP_052253166.1 KdsC family phosphatase -
  ACOH24_RS02895 - 616739..617719 (-) 981 WP_039395525.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55111.96 Da        Isoelectric Point: 5.1828

>NTDB_id=1110986 ACOH24_RS02870 WP_039395518.1 612352..613842(-) (rpoN/rpoN1) [Pandoraea sputorum strain whet-A408]
MKPTLQLRTSQHLTLTPQLQQSIRLLQLSTLELQQEVEHALTQNPMLEREDDWLAGSVRVGTDGSLRNERSSSSGSSNDN
GPEASNGHDEARELDGEARFDDNASDNGSDWSLNDFARSGSASDDDDNARPQLHVDHPNLREHLLAQLRLTKASPRDRAL
VEFLIESLDEDGYLGSLLDEIQAEMPEELALETEEINAALALLQSFDPAGVGARSPAECLRLQLQRLPASGVRTLSLRIV
TDHLELLAARDYTRLRRLLGVGEDGLRAAHQLIRSLDPFPGAAYGAPQADYVVPDVLVRKQGSGWTAELNPEVMPRLRIN
EMYARILRNNRNDPGTGNLQQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFTHGEIGMRPLVLREIADTLGLHEST
ISRVTTSKYMLTPFGTFELKYFFGSHVATEAGGAASSTAIRALIKQLIGAEDPQSPLSDSRIAELLAEQGFVVARRTVAK
YREAMRIPAVNLRKSL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1110986 ACOH24_RS02870 WP_039395518.1 612352..613842(-) (rpoN/rpoN1) [Pandoraea sputorum strain whet-A408]
ATGAAACCGACTCTTCAACTCCGCACCTCTCAGCACCTGACCCTCACGCCGCAGTTGCAGCAATCGATCCGGTTGTTGCA
ACTGTCGACGCTCGAACTTCAACAGGAAGTCGAGCACGCCCTTACCCAGAACCCGATGCTCGAACGCGAGGACGATTGGC
TCGCCGGTTCGGTACGTGTGGGCACAGACGGGTCGCTGCGCAACGAACGGAGTTCGTCGTCGGGCAGTTCGAACGACAAT
GGCCCCGAGGCCTCCAACGGTCACGACGAAGCGCGCGAACTCGATGGTGAGGCCCGCTTCGACGACAACGCGTCGGACAA
CGGCAGCGACTGGAGCCTGAACGACTTCGCCCGCTCCGGCAGCGCATCGGACGACGACGACAATGCGCGTCCGCAACTTC
ACGTCGACCACCCCAATCTCCGCGAACATCTGCTGGCCCAACTGCGCCTGACCAAGGCGAGTCCGCGCGACCGCGCGCTG
GTGGAATTCCTGATCGAATCGCTGGACGAAGACGGCTACCTCGGTAGCCTGCTCGACGAAATTCAGGCCGAAATGCCTGA
AGAACTGGCGCTCGAAACGGAAGAGATCAACGCGGCGCTGGCGCTGCTGCAAAGCTTCGACCCGGCGGGCGTGGGTGCCC
GCAGCCCGGCCGAATGCCTGCGTCTACAGCTCCAGCGCCTGCCCGCTAGCGGTGTGCGCACCCTGTCGCTGCGCATCGTC
ACCGATCACCTGGAACTGCTGGCCGCGCGCGATTACACGCGTCTGCGCCGCCTGCTAGGTGTCGGCGAAGACGGCCTGCG
CGCCGCGCATCAGCTGATTCGCTCGCTGGACCCCTTCCCGGGCGCGGCTTACGGCGCGCCTCAGGCCGACTACGTCGTGC
CGGACGTGCTGGTACGCAAGCAAGGGAGCGGCTGGACGGCGGAGCTGAATCCGGAAGTAATGCCGCGACTGCGTATCAAC
GAGATGTATGCGCGCATTCTCCGAAATAACCGGAACGATCCGGGAACCGGCAACCTCCAACAGCAGTTGCAGGAAGCGCG
CTGGCTGATCAAGAACATCCAGCAACGCTTCGACACGATCCTGCGGGTGGCGCAGGCGATTGTCGAGCGCCAAAAGAACT
TCTTCACGCATGGCGAAATCGGCATGCGGCCCTTGGTTTTACGCGAGATTGCTGATACGCTGGGTTTACATGAATCCACG
ATTTCACGCGTGACAACGAGTAAGTACATGCTCACTCCATTTGGAACCTTCGAGCTCAAGTACTTCTTCGGATCACACGT
GGCAACGGAAGCCGGAGGCGCTGCGTCATCGACCGCCATCCGCGCACTCATCAAGCAACTCATAGGAGCAGAAGACCCGC
AGAGCCCCCTTTCCGATAGCCGTATCGCGGAACTGCTGGCAGAGCAAGGTTTTGTGGTGGCGCGGCGCACTGTCGCGAAG
TACCGCGAGGCCATGCGAATCCCCGCAGTGAACTTGCGCAAATCTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(134-323)

Sigma-54, DNA binding domain (Sigma54_DBD)

(339-494)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239S8W9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

69.062

100

0.698

Multiple sequence alignment