Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACNR93_RS08585 Genome accession   NZ_CP184736
Coordinates   1740940..1742301 (-) Length   453 a.a.
NCBI ID   WP_033153501.1    Uniprot ID   A0A6G8HZM5
Organism   Streptococcus equinus strain NM-2-29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1735940..1747301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR93_RS08565 (ACNR93_08565) - 1736370..1737536 (-) 1167 WP_039691319.1 CynX/NimT family MFS transporter -
  ACNR93_RS08570 (ACNR93_08570) gltX 1737735..1739192 (-) 1458 WP_021143229.1 glutamate--tRNA ligase -
  ACNR93_RS08575 (ACNR93_08575) - 1739371..1740297 (-) 927 WP_420543584.1 aldo/keto reductase -
  ACNR93_RS08580 (ACNR93_08580) - 1740326..1740823 (-) 498 WP_420543585.1 beta-class carbonic anhydrase -
  ACNR93_RS08585 (ACNR93_08585) radA 1740940..1742301 (-) 1362 WP_033153501.1 DNA repair protein RadA Machinery gene
  ACNR93_RS08590 (ACNR93_08590) - 1742308..1743399 (-) 1092 WP_420543586.1 hypothetical protein -
  ACNR93_RS08595 (ACNR93_08595) - 1743422..1743868 (-) 447 WP_287969595.1 dUTP diphosphatase -
  ACNR93_RS08600 (ACNR93_08600) - 1743962..1745191 (-) 1230 WP_420543587.1 MFS transporter -
  ACNR93_RS08605 (ACNR93_08605) - 1745203..1746030 (-) 828 WP_420543588.1 hypothetical protein -
  ACNR93_RS08610 (ACNR93_08610) - 1746101..1747162 (-) 1062 WP_420543589.1 ThiF family adenylyltransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49450.86 Da        Isoelectric Point: 6.3749

>NTDB_id=1110978 ACNR93_RS08585 WP_033153501.1 1740940..1742301(-) (radA) [Streptococcus equinus strain NM-2-29]
MAKKKTTFICQECGYHSPKYLGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSINYSRTKTGMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLAEKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRAQIE
QIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNSLVGIDMPSSIEVVGVTTVGEVLKKVFK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1110978 ACNR93_RS08585 WP_033153501.1 1740940..1742301(-) (radA) [Streptococcus equinus strain NM-2-29]
ATCGCTAAGAAGAAAACAACGTTTATTTGTCAGGAGTGTGGCTATCATTCTCCTAAATATCTAGGACGTTGTCCAAACTG
TTCATCTTGGACGTCTTTTGTTGAAGAAGTCGAAGTACAAGAGGTTAAAAATGCGCGTGTCAGTTTGACAGGTGAAAAGA
GCAAACCAACTAAGTTGAAGGACGTTAGCTCGATTAATTATTCACGCACAAAGACTGGCATGGATGAATTTAACCGTGTG
CTTGGTGGTGGTGTGGTGCCAGGTAGTCTGGTGCTTATCGGTGGTGACCCAGGTATCGGGAAATCAACGCTTCTTTTGCA
GGTTTCGATTCAACTGGCAGAGAAAGGAACGGTTCTTTACGTTTCTGGTGAAGAATCAGCTGAGCAGATTAAACTTCGCA
GTGAACGCCTTGGTGATATTGATAATGAATTTTACCTTTATGCTGAGACAAATATGCAAGCTATCCGTGCGCAGATTGAG
CAAATCCAGCCTGATTTCTTAATTATTGACTCGATTCAAACGATTATGAGTCCTGATATTTCAGGAGTCCAAGGTTCGGT
ATCTCAAGTGCGTGAAGTGACGGCAGAGCTCATGCAGTTGGCTAAGACTAATAACATCGCAACCTTTATTGTTGGTCACG
TGACTAAGGAAGGACAGCTTGCTGGGCCGCGTATGCTTGAGCATATGGTGGATACGGTGCTTTATTTTGAGGGTGAACGC
CATCATACTTTCCGTATCTTGCGTGCAGTGAAAAACCGTTTTGGTTCAACTAACGAAATCGGCATTTTTGAAATGCAATC
TGGTGGGCTGGTTGAAGTGCTTAATCCGAGCCAAGTTTTCTTAGAGGAACGTTTGGATGGCGCGACTGGTTCAGCTATCG
TGGTAACCATGGAAGGTAGTCGTCCGATTTTGGCGGAAGTTCAAGCTTTGGTGACACCGACTGTTTTTGGAAATGCCAAA
CGCACAACGACTGGGCTTGATTTCAATCGCGTTAGTCTGATTATGGCGGTACTTGAAAAACGTTGTGGACTTTTATTGCA
AAATCAAGATGCTTATCTCAAATCGGCTGGTGGTGTCAAACTTGATGAGCCAGCGATTGACTTGGCAGTAGCGGTAGCTA
TTGCGTCAAGCTACAAAGAAAAGCCAACAAATCCACAAGAAGCTTTCATCGGTGAAATTGGTTTGACAGGTGAAATCCGT
CGCGTCACTCGTATTGAACAACGTATCAATGAAGCAGCTAAGCTTGGCTTTACAAAAGTTTACGCACCGAAAAATTCTTT
AGTTGGTATCGATATGCCATCATCTATTGAAGTTGTTGGTGTGACAACTGTTGGAGAAGTTCTTAAGAAAGTTTTTAAAT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8HZM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.496

99.779

0.883
  radA Streptococcus pneumoniae D39

88.496

99.779

0.883
  radA Streptococcus pneumoniae R6

88.496

99.779

0.883
  radA Streptococcus pneumoniae TIGR4

88.496

99.779

0.883
  radA Streptococcus mitis SK321

88.496

99.779

0.883
  radA Streptococcus mitis NCTC 12261

88.274

99.779

0.881
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

100

0.62

Multiple sequence alignment