Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACNR93_RS03085 Genome accession   NZ_CP184736
Coordinates   591103..592905 (+) Length   600 a.a.
NCBI ID   WP_420543884.1    Uniprot ID   -
Organism   Streptococcus equinus strain NM-2-29     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 586103..597905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR93_RS03060 (ACNR93_03060) queA 586807..587835 (-) 1029 WP_021141922.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  ACNR93_RS03065 (ACNR93_03065) - 587995..588501 (+) 507 WP_033152227.1 VIT1/CCC1 transporter family protein -
  ACNR93_RS03070 (ACNR93_03070) nagB 588638..589342 (+) 705 WP_420543881.1 glucosamine-6-phosphate deaminase -
  ACNR93_RS03075 (ACNR93_03075) - 589375..590091 (+) 717 WP_420543882.1 pseudouridine synthase -
  ACNR93_RS03080 (ACNR93_03080) coiA 590141..591103 (+) 963 WP_420543883.1 competence protein CoiA Machinery gene
  ACNR93_RS03085 (ACNR93_03085) pepF 591103..592905 (+) 1803 WP_420543884.1 oligoendopeptidase F Regulator
  ACNR93_RS03090 (ACNR93_03090) - 592975..593355 (+) 381 Protein_535 GNAT family N-acetyltransferase -
  ACNR93_RS03095 (ACNR93_03095) - 593491..594102 (+) 612 WP_420544063.1 HAD-IA family hydrolase -
  ACNR93_RS03100 (ACNR93_03100) - 594154..594855 (+) 702 WP_141347892.1 O-methyltransferase -
  ACNR93_RS03105 (ACNR93_03105) - 594924..595985 (+) 1062 WP_039691003.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69310.34 Da        Isoelectric Point: 4.6356

>NTDB_id=1110943 ACNR93_RS03085 WP_420543884.1 591103..592905(+) (pepF) [Streptococcus equinus strain NM-2-29]
MSDNRSHIDEKYKWDLSTVFVTDDAWEEALAELDSDLEDAKKFKGHLIESSKTLLDITESYLELSRRLEKVYVYASMKND
QDTTVAKYQEFEAKATTLYAKYSEVFAFYEPELMQLSQDDFAKFVAETPALSAYAHFFEKLFKRQAHVLSQKEEELLAGA
HEIFGAAGETFEILDNADIVFPVVLDDEGNEVQLTHGNFISLLESKNRDVRKAAYEAMYATYEQYQHTYAKTLQTNVKVH
NFDARVHHFKSAREAALSANFIPESVYDTLIERVNAHLPLLHRYVELRKKVLKLDDLKMYDIHTPLSEMDMSFTYEEALK
KAEEVLSVFGKDYSERVHRAFTERWIDVHVNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENILTETLLKEVDDDKARFAILNHYLDGFKGTIFRQAQFAEFEDIIHKADQNGEVLTSEY
LNSIYADLNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYATGFAAASYLADKVVHGTSDDINCYLDYLKAGNSDYPL
NVIKKAGVDMTSSDYLDAAFKIFEERLNELETLVEKGEHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1110943 ACNR93_RS03085 WP_420543884.1 591103..592905(+) (pepF) [Streptococcus equinus strain NM-2-29]
ATGTCAGATAATCGTAGTCATATTGATGAAAAGTATAAATGGGATTTGAGTACTGTCTTTGTGACAGATGATGCTTGGGA
AGAAGCACTAGCTGAGCTTGATTCAGATTTAGAAGATGCTAAAAAATTTAAAGGGCACTTGATTGAATCAAGTAAGACTT
TGCTCGATATCACTGAAAGTTATCTTGAATTGTCACGCCGCTTGGAAAAAGTTTATGTCTATGCGTCAATGAAAAATGAC
CAAGATACAACGGTTGCTAAATACCAAGAATTCGAAGCAAAAGCAACAACACTTTATGCCAAATACAGCGAAGTTTTTGC
ATTTTATGAACCAGAATTGATGCAATTATCTCAAGATGATTTCGCCAAATTCGTGGCTGAAACACCAGCACTTTCAGCTT
ATGCTCATTTCTTTGAAAAACTTTTCAAACGTCAAGCGCACGTCTTGTCACAAAAAGAAGAAGAGTTGCTAGCAGGTGCT
CACGAAATCTTTGGTGCAGCTGGAGAGACTTTTGAAATTCTAGATAATGCTGACATTGTCTTTCCTGTTGTTTTGGATGA
TGAGGGCAATGAAGTTCAACTAACACATGGTAACTTCATCAGTCTTTTGGAATCAAAAAATCGCGATGTTCGAAAAGCGG
CTTACGAAGCTATGTATGCTACGTATGAACAATATCAACATACTTATGCCAAAACACTTCAAACAAATGTAAAAGTTCAT
AACTTTGATGCTCGTGTTCACCATTTCAAATCAGCGCGTGAAGCAGCACTTTCAGCAAACTTCATTCCTGAATCTGTCTA
CGATACTTTGATTGAACGCGTGAATGCACACTTGCCATTGCTTCATCGTTATGTGGAACTTCGTAAGAAAGTTCTTAAAC
TTGATGATTTGAAAATGTATGATATTCATACACCTTTGTCTGAAATGGATATGAGTTTCACTTACGAGGAAGCTTTAAAA
AAAGCAGAAGAGGTTTTGTCTGTCTTTGGTAAAGATTATTCAGAACGTGTTCATCGAGCTTTCACAGAACGCTGGATTGA
CGTTCATGTCAACAAAGGAAAACGTTCAGGAGCTTATTCTGGTGGGGCTTATGATACAAATGCCTTTATGCTTTTGAACT
GGCAAGATACACTTGATAATCTTTTTACTTTGGTACACGAAACAGGGCACAGCCTTCATTCTACTTTTACGCGTGAAACT
CAACCATACGTTTATGGTGATTACAGCATTTTCTTGGCTGAAATTGCTTCAACGACGAATGAAAATATCTTAACAGAAAC
ACTCTTAAAAGAAGTTGATGATGACAAAGCACGCTTTGCAATTTTGAATCACTACTTGGATGGTTTCAAAGGGACTATTT
TCCGTCAAGCACAATTCGCTGAATTTGAAGATATTATCCATAAAGCTGACCAAAATGGTGAAGTTTTGACGAGTGAATAT
CTCAATAGCATTTATGCTGACTTAAATGAAAAATACTACGGACTCAGCAAAGAAGATAATCCAGAAATTCAATACGAATG
GGCACGCATTCCGCATTTCTACTATAATTACTATGTTTATCAATATGCGACAGGTTTTGCGGCAGCAAGTTATCTAGCTG
ACAAAGTAGTTCACGGTACATCAGATGACATTAACTGTTACCTTGATTATCTCAAGGCTGGTAATTCTGATTATCCGTTA
AATGTGATTAAAAAAGCTGGTGTGGACATGACAAGCAGTGATTATTTGGATGCTGCATTCAAGATTTTTGAAGAACGTCT
AAATGAATTAGAAACTTTGGTTGAAAAAGGGGAACACCTTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71

100

0.71

Multiple sequence alignment