Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACN92M_RS21060 Genome accession   NZ_CP184725
Coordinates   4767981..4768934 (-) Length   317 a.a.
NCBI ID   WP_420539376.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain L29     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4762981..4773934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN92M_RS21035 (ACN92M_21035) - 4763449..4764360 (-) 912 WP_420539374.1 aldo/keto reductase -
  ACN92M_RS21040 (ACN92M_21040) - 4764519..4765262 (-) 744 WP_420539375.1 alpha/beta hydrolase -
  ACN92M_RS21045 (ACN92M_21045) - 4765296..4766276 (-) 981 WP_031462258.1 siderophore ABC transporter substrate-binding protein -
  ACN92M_RS21050 (ACN92M_21050) - 4766289..4767047 (-) 759 WP_025365864.1 ABC transporter ATP-binding protein -
  ACN92M_RS21055 (ACN92M_21055) - 4767041..4767991 (-) 951 WP_017425553.1 iron chelate uptake ABC transporter family permease subunit -
  ACN92M_RS21060 (ACN92M_21060) ceuB 4767981..4768934 (-) 954 WP_420539376.1 ABC transporter permease Machinery gene
  ACN92M_RS21065 (ACN92M_21065) - 4769259..4769936 (+) 678 WP_340865592.1 response regulator transcription factor -
  ACN92M_RS21070 (ACN92M_21070) - 4769937..4770854 (+) 918 WP_420539377.1 sensor histidine kinase -
  ACN92M_RS21075 (ACN92M_21075) - 4770962..4771639 (+) 678 WP_420539378.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34734.70 Da        Isoelectric Point: 9.9012

>NTDB_id=1110867 ACN92M_RS21060 WP_420539376.1 4767981..4768934(-) (ceuB) [Paenibacillus polymyxa strain L29]
MKLRYLILAFIVLAFASVFIGVHDVTPLDLFHLSNDQTQVLLISRFPRLVSIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLVFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1110867 ACN92M_RS21060 WP_420539376.1 4767981..4768934(-) (ceuB) [Paenibacillus polymyxa strain L29]
ATGAAATTGCGCTATTTAATACTGGCTTTTATCGTACTGGCCTTCGCCTCGGTGTTTATCGGTGTGCATGATGTAACTCC
ACTTGATTTGTTCCACTTATCCAACGATCAAACGCAGGTGCTCCTGATTAGCAGATTCCCACGCTTGGTCAGCATCATTA
TCGCAGGGGCGAGTATGAGTATCTGCGGGCTGATCATGCAGCAGCTTACCCGGAATCGGTTTGTTTCGCCGACCACCGCA
GGCACGATGGATGCGGCACGATTAGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCGGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTCTAGGGGGAACCCTGGTTTTCATGAAGATACTGGATAAAATCCGTTTTAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTGACGACTTTTTTTGCTTACAAATACAATCTGATT
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATTATGAGTGGTCGCTACGAAATGCTGTATCTCAGTGTTCC
TTTGGTCGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCTAATTTGGGCG
TACATTACAAGCGCACCGTCAATGTGGGTTTGGTGATCGTGGCTTTGGTGTCCTCTGTTGTTATCTTAACCGTCGGGACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGTATGTACATGGGGGATAATCTGAAAAAAAGCCTAGCACATAC
AGCGATCTTGGGTGCCGTGTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTACCCATATGAAATTTCTGTAG
GGCTTACGGTTGGTGTAATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.159

99.369

0.498

Multiple sequence alignment