Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACN92M_RS11950 Genome accession   NZ_CP184725
Coordinates   2749049..2750899 (+) Length   616 a.a.
NCBI ID   WP_420540255.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain L29     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2744049..2755899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN92M_RS11930 (ACN92M_11930) - 2744265..2745938 (+) 1674 WP_420540253.1 RICIN domain-containing protein -
  ACN92M_RS11935 (ACN92M_11935) - 2746105..2746320 (+) 216 Protein_2289 nitronate monooxygenase -
  ACN92M_RS11940 (ACN92M_11940) - 2746806..2747213 (+) 408 WP_045245283.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACN92M_RS11945 (ACN92M_11945) rcrP 2747293..2749062 (+) 1770 WP_420540254.1 ABC transporter ATP-binding protein Regulator
  ACN92M_RS11950 (ACN92M_11950) rcrQ 2749049..2750899 (+) 1851 WP_420540255.1 ABC transporter ATP-binding protein Regulator
  ACN92M_RS11955 (ACN92M_11955) - 2751107..2751388 (+) 282 WP_240753709.1 helix-turn-helix domain-containing protein -
  ACN92M_RS11960 (ACN92M_11960) - 2751443..2751874 (+) 432 WP_420540326.1 IclR family transcriptional regulator -
  ACN92M_RS11965 (ACN92M_11965) - 2752100..2752567 (+) 468 WP_420540327.1 type 1 glutamine amidotransferase -
  ACN92M_RS11970 (ACN92M_11970) - 2754613..2754912 (+) 300 WP_420540256.1 condensation domain-containing protein -
  ACN92M_RS11975 (ACN92M_11975) - 2754903..2755862 (+) 960 WP_420540257.1 condensation domain-containing protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 68271.23 Da        Isoelectric Point: 6.7521

>NTDB_id=1110857 ACN92M_RS11950 WP_420540255.1 2749049..2750899(+) (rcrQ) [Paenibacillus polymyxa strain L29]
MDKNEHTVGSKHIEMKQRGPIGRGPTEGMGTGKKANDFKKNIHQLLSYIKAYMPMIILSMVLALAGSVFNVIGPDKLSDI
ANLIQEGIVTGIDVNAVQKIVLVLVVLYGLGLIFNYFQGFITVTVSQRLTKKMRTELSRKINHMPLKYFDATSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTITGIVATLIGFSLMTIIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEKAAKEVFHGINGRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCIVGALLVNQHVITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELVDESDKTMKLDNAKGDVEFKHVRFGYKEDHMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNGGEIYIDGTPISQLTRENVHKLFCMVLQDTWLFEGTIRENIVFSKEHVTD
EQVEAECRAVGLHSFLKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDAPMLILDEATSSVDTRTELLIQQAMDRLTV
GKTSFVIAHRLSTIKNADLILVMKDGNIIETGNHEELLGKNGFYADLYNSQFEHVS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=1110857 ACN92M_RS11950 WP_420540255.1 2749049..2750899(+) (rcrQ) [Paenibacillus polymyxa strain L29]
ATGGACAAGAATGAACACACCGTCGGCAGTAAGCACATCGAAATGAAACAGCGAGGTCCCATAGGTAGAGGTCCTACGGA
AGGGATGGGAACTGGTAAAAAAGCGAATGATTTTAAAAAGAACATTCACCAGCTCTTATCCTACATCAAGGCTTATATGC
CTATGATCATACTCTCTATGGTGCTGGCGCTGGCCGGTTCCGTCTTCAACGTGATTGGTCCAGATAAGCTCAGCGATATT
GCCAACCTGATCCAGGAAGGAATCGTAACAGGGATTGATGTGAATGCTGTTCAGAAGATTGTTCTTGTATTGGTAGTTTT
GTATGGTCTCGGCCTTATCTTTAATTATTTCCAAGGATTCATTACGGTAACCGTGTCACAGCGTCTTACAAAGAAGATGC
GGACAGAGCTGTCCCGAAAAATCAATCATATGCCTTTGAAGTATTTTGATGCTACGAGCTATGGTAATGTGCTTAGCCGT
GTGACCAATGATGTCGATACGATTGGACAAACGTTAAACAACAGTCTCGGCACGCTTGTCAGCGCACTGGCAACCTTTGT
GGGTGCATTGATTATGATGCTATATACGAACTGGATCATGACCATTACTGGGATTGTAGCTACGCTGATCGGTTTTTCAC
TGATGACCATAATTATGAAGCATTCACAGAAATATTTTGTAGCACAACAAGCAGAGCTTGGCCAGATCAACGGTCATATC
GAAGAAACTTATGCTGGTCATAACGTAGTCAAGGTATATAACGGAGAAAAAGCAGCCAAAGAAGTGTTTCATGGCATTAA
TGGCCGCTTGTATACAAATGCATGGAAATCCCAGTTCATGTCTGGCCTGATGATGCCGGTTATGATGTTCATCGGGAATT
TCGGTTATGTTGCGGTCTGTATCGTGGGCGCTTTGCTGGTGAACCAACATGTTATAACGATCGGAACTATCGTGGCCTTT
ATGGTGTATATTCGTCTGTTTACACAGCCTTTGTCACAGTTGGCGCAGGCTGCAACCAATTTGCAATCGGCGGCAGCTGC
TAGTGAACGTGTATTCGAATTTCTGGGTGAAGAAGAATTGGTGGATGAGAGCGACAAGACCATGAAGCTGGATAACGCCA
AAGGAGATGTCGAATTTAAGCATGTCCGTTTCGGTTATAAGGAAGACCATATGATTATCAAGGACTTCTCTATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTTGGCCCTACAGGTGCCGGTAAGACGACGCTCGTGAATTTGCTCATGCGGTTCTA
TGAGCTGAACGGAGGGGAAATTTATATTGATGGAACTCCGATCAGCCAATTAACACGTGAGAATGTTCATAAATTATTCT
GCATGGTACTGCAGGATACATGGCTGTTTGAAGGAACGATTCGTGAGAATATCGTCTTTTCCAAAGAGCATGTTACCGAT
GAACAGGTAGAAGCCGAATGTAGAGCAGTGGGTCTGCATAGCTTCCTTAAAACTTTACCGCAGGGTTATGATACAGTGCT
AGACGACAAAGCTAATCTCTCTGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCCATGATTGAAGATGCGCCCATGC
TCATTCTGGACGAGGCCACAAGTTCGGTCGATACGCGTACGGAGTTACTGATTCAACAAGCGATGGACCGACTTACTGTT
GGGAAAACCTCCTTTGTGATTGCCCACCGTCTCTCAACGATTAAAAACGCCGATCTGATTCTGGTCATGAAGGACGGTAA
CATTATCGAAACGGGTAATCATGAGGAATTGCTAGGTAAAAACGGATTCTATGCCGATTTATACAACAGCCAGTTTGAAC
ATGTATCCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(394-541)

ABC transporter transmembrane region (ABC_membrane)

(57-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.633

93.669

0.521

Multiple sequence alignment