Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACN92M_RS11945 Genome accession   NZ_CP184725
Coordinates   2747293..2749062 (+) Length   589 a.a.
NCBI ID   WP_420540254.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain L29     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2742293..2754062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN92M_RS11925 (ACN92M_11925) - 2743827..2744055 (-) 229 Protein_2287 LysR substrate-binding domain-containing protein -
  ACN92M_RS11930 (ACN92M_11930) - 2744265..2745938 (+) 1674 WP_420540253.1 RICIN domain-containing protein -
  ACN92M_RS11935 (ACN92M_11935) - 2746105..2746320 (+) 216 Protein_2289 nitronate monooxygenase -
  ACN92M_RS11940 (ACN92M_11940) - 2746806..2747213 (+) 408 WP_045245283.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACN92M_RS11945 (ACN92M_11945) rcrP 2747293..2749062 (+) 1770 WP_420540254.1 ABC transporter ATP-binding protein Regulator
  ACN92M_RS11950 (ACN92M_11950) rcrQ 2749049..2750899 (+) 1851 WP_420540255.1 ABC transporter ATP-binding protein Regulator
  ACN92M_RS11955 (ACN92M_11955) - 2751107..2751388 (+) 282 WP_240753709.1 helix-turn-helix domain-containing protein -
  ACN92M_RS11960 (ACN92M_11960) - 2751443..2751874 (+) 432 WP_420540326.1 IclR family transcriptional regulator -
  ACN92M_RS11965 (ACN92M_11965) - 2752100..2752567 (+) 468 WP_420540327.1 type 1 glutamine amidotransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65103.42 Da        Isoelectric Point: 7.0455

>NTDB_id=1110856 ACN92M_RS11945 WP_420540254.1 2747293..2749062(+) (rcrP) [Paenibacillus polymyxa strain L29]
MLKIFKYLKKNEWMFVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTAGTPMSDLLIPGIYMLLCAVGSMIASIIVGFFAA
KVAAGLAMRLRAMVFDKALSFSMEEMNSFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIAKIADKNWQWTAS
TGVAVAVLILMLSVIVIFALPSFQKIQRLTDNLNRVTREHLTGLRVVRAYNADQYQEEKFGQANTELMNTNLFANRLMTM
VGPGMTFIMSGLSVSIYWIGAYLINGTAVPDRISLFSNMVVFSSYAVQVVMAFMMVSMIFFLMPRASISAKRIMEVLNTE
SRIIDGHETAGEEGVMGQVEFRNVSFKYPDAEEPVLRNISFTAKQGETVAFIGATGSGKTSVINLISRFYDVTEGEVLVD
GVNVRNYKQQTLHNKIGYVPQRAVLFSGTVASNVSYGDNGRAEASEKLVKTAVEIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYVFDDSFSALDYRTDRILRSALKQETGHASTLIVAQRIGTIKDADRIIVLDQGEIVGNGT
HEELMANCSTYQEIAYSQLSKEELVHGQE

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=1110856 ACN92M_RS11945 WP_420540254.1 2747293..2749062(+) (rcrP) [Paenibacillus polymyxa strain L29]
ATGCTGAAGATATTCAAATATCTCAAGAAAAATGAATGGATGTTCGTGCTTTGCAGCTTGGCCTTCATCGTTGTGCAGGT
GTGGCTGGATTTGAAGCTGCCTGATTATATGGCCGAAATTACAACCAAGCTGCAAACTGCAGGAACGCCGATGTCGGACC
TGCTGATTCCCGGTATTTATATGCTGTTATGTGCTGTCGGCAGTATGATTGCATCTATTATTGTCGGCTTTTTTGCGGCA
AAGGTCGCGGCAGGACTGGCCATGCGCCTGCGTGCGATGGTCTTTGACAAGGCCTTATCTTTTTCGATGGAAGAGATGAA
CAGCTTTTCAACAGCCAGCCTTATTACCCGCTCCACGAACGATGTTACCCAAATTCAAACGGTGGTTGCGCTGGGGTTGC
AGGTGATCATCAAGGCGCCGATTCTGGCCGTGTGGGCCATTGCAAAGATCGCAGATAAAAACTGGCAGTGGACTGCCTCT
ACAGGAGTGGCTGTGGCTGTCCTGATCCTGATGCTGAGTGTCATTGTTATTTTTGCTCTCCCCAGTTTCCAAAAAATCCA
ACGTCTCACTGATAATCTGAACAGGGTAACACGTGAGCATCTGACGGGGCTTCGCGTAGTGCGTGCTTATAATGCAGATC
AGTATCAGGAGGAGAAGTTTGGGCAGGCCAATACCGAATTGATGAATACAAACCTGTTTGCGAACCGGTTAATGACAATG
GTTGGTCCGGGCATGACCTTTATTATGTCGGGTCTGAGTGTCTCGATTTATTGGATTGGCGCTTACCTGATTAACGGAAC
GGCCGTGCCGGACCGCATTTCGCTATTCTCTAATATGGTCGTATTCTCATCTTATGCGGTGCAGGTGGTCATGGCCTTTA
TGATGGTAAGTATGATATTCTTCCTGATGCCTCGAGCTTCGATTTCTGCCAAACGGATTATGGAGGTATTGAATACCGAA
TCCCGCATCATTGACGGGCATGAGACAGCTGGAGAAGAGGGCGTTATGGGTCAGGTGGAATTCCGTAATGTCAGCTTTAA
ATATCCGGATGCGGAGGAGCCTGTGCTTCGCAACATTAGCTTTACGGCAAAACAAGGCGAGACGGTTGCCTTTATTGGCG
CAACAGGCAGCGGTAAAACCAGCGTAATCAATCTGATTTCTCGTTTCTACGATGTGACTGAGGGAGAGGTGCTCGTGGAT
GGCGTGAATGTCAGAAACTATAAGCAGCAGACACTCCATAACAAAATCGGGTATGTCCCACAGAGAGCCGTACTTTTCAG
CGGTACAGTGGCATCCAATGTTTCGTATGGCGATAACGGAAGAGCAGAAGCTTCGGAGAAACTCGTCAAAACAGCCGTGG
AGATTGCCCAAGGCACGGAGTTTGTCGAAAAAATGGACGGTCAGTATCAAGGACGGATTTCACAAGGTGGAGCGAACGTG
TCCGGTGGTCAAAAGCAGCGTCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAGATTTATGTCTTCGATGATTCCTT
CTCGGCATTGGACTACAGAACGGACCGGATTCTGCGCTCGGCGCTTAAACAAGAAACTGGCCATGCTTCGACACTCATCG
TTGCTCAGCGCATCGGCACCATTAAGGACGCTGACCGGATTATCGTACTGGACCAGGGTGAGATTGTAGGGAACGGAACA
CACGAAGAGCTGATGGCGAATTGCAGCACCTATCAGGAGATCGCTTATTCGCAGCTTTCGAAGGAGGAACTCGTACATGG
ACAAGAATGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.167

100

0.531

Multiple sequence alignment