Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACKTVB_RS21250 Genome accession   NZ_AP038752
Coordinates   4356543..4357976 (+) Length   477 a.a.
NCBI ID   WP_407859127.1    Uniprot ID   -
Organism   Enterobacter pseudoroggenkampii strain GVv1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4351543..4362976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTVB_RS21220 (GVv1_41900) - 4352110..4353087 (+) 978 WP_023309354.1 calcium/sodium antiporter -
  ACKTVB_RS21225 (GVv1_41910) kdsD 4353100..4354086 (+) 987 WP_008501450.1 arabinose-5-phosphate isomerase KdsD -
  ACKTVB_RS21230 kdsC 4354101..4354668 (+) 568 Protein_4156 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  ACKTVB_RS21235 (GVv1_41940) lptC 4354665..4355240 (+) 576 WP_024906353.1 LPS export ABC transporter periplasmic protein LptC -
  ACKTVB_RS21240 (GVv1_41950) lptA 4355209..4355763 (+) 555 WP_407859126.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  ACKTVB_RS21245 (GVv1_41960) lptB 4355770..4356495 (+) 726 WP_023309359.1 LPS export ABC transporter ATP-binding protein -
  ACKTVB_RS21250 (GVv1_41970) rpoN/rpoN1 4356543..4357976 (+) 1434 WP_407859127.1 RNA polymerase factor sigma-54 Machinery gene
  ACKTVB_RS21255 (GVv1_41980) hpf 4357999..4358286 (+) 288 WP_008501444.1 ribosome hibernation promoting factor -
  ACKTVB_RS21260 (GVv1_41990) ptsN 4358369..4358860 (+) 492 WP_008501443.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ACKTVB_RS21265 (GVv1_42000) rapZ 4358906..4359760 (+) 855 WP_014885397.1 RNase adapter RapZ -
  ACKTVB_RS21270 (GVv1_42010) npr 4359757..4360029 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  ACKTVB_RS21275 (GVv1_42020) mtgA 4360069..4360794 (-) 726 WP_048989787.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  ACKTVB_RS21280 (GVv1_42030) elbB 4360791..4361444 (-) 654 WP_032645081.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54116.87 Da        Isoelectric Point: 4.3080

>NTDB_id=111063 ACKTVB_RS21250 WP_407859127.1 4356543..4357976(+) (rpoN/rpoN1) [Enterobacter pseudoroggenkampii strain GVv1]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESMGDDEIELEEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWLDEARLIISDHLDLLANHDFRSLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKNNGRWVVELNSDSIPRLQINQQYASMCTSVRNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=111063 ACKTVB_RS21250 WP_407859127.1 4356543..4357976(+) (rpoN/rpoN1) [Enterobacter pseudoroggenkampii strain GVv1]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAACTGGCGATGACGCCGCAGCTACAGCAGGCAATTCGCCTGTTGCA
ACTGTCCACGTTAGAACTTCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAATCCCCTGCTGGAACAAACCGATCTTCATG
ACGAGGTAGATACCCAGCAATCGCAGGATACAGAAGCGCTCGACACCGCGGATGCACTCGAACAAAAAGAGATGCCGGAC
GAGCTTCCGCTGGATGCCAGCTGGGATGAAATCTACACCGCCGGAACCCCTTCCGGTACGCGTGCAGACTACCAGGATGA
TGAGCTACCGGTCTACCAGGGCGAAACCACCCAGTCACTGCAGGATTACCTGATGTGGCAGGTGGAACTTACTCCCTTCT
CCGATACCGACCGCGCGATTGCCACCTCAATTGTCGATGCCGTTGACGACACTGGCTATTTGACCGTCACGCTGGACGAT
ATTCTGGAAAGCATGGGCGACGACGAGATAGAGCTTGAGGAAGTTGAAGCCGTTCTGAAGCGCATCCAGCGTTTCGATCC
GGTAGGCGTGGCCGCAAAAGATCTGCGCGACTGCCTGCTGATCCAGCTTTCTCAGTTCAGCAAAGAGACGCCGTGGCTAG
ACGAGGCGCGCTTAATCATCAGCGATCATCTGGATCTGCTGGCGAACCACGATTTCCGCTCCCTGATGCGCGTCACGCGC
CTGAAAGAAGAGGTGCTGAAAGAAGCGGTGAATCTGATCCAGTCGCTCGATCCGCGCCCCGGTCAGTCGATCCAGACCAG
CGAACCCGAGTACGTGATCCCGGATGTGCTGGTCAGAAAAAATAACGGCCGCTGGGTCGTTGAACTGAACTCTGACAGTA
TCCCTCGCCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGTGCGTAACGACTCCGACAATCAATATATTCGT
AGCAATTTGCAGGAAGCGCGATGGCTGATCAAAAGTCTGGAGAGCCGAAATGATACGCTGCTACGCGTCAGCCGCTGCAT
TGTCGAACAACAGCAGGCGTTCTTTGAGCAGGGTGAAGAGTATATGAAACCGATGGTGCTGGCGGATATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGTGTCACCACGCAGAAGTATCTGCACAGTCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCATGTGAATACCGAGGGCGGCGGCGAAGCGTCGTCCACGGCCATTCGTGCCCTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCGCTAAGCGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCCAACCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.347

100

0.48

Multiple sequence alignment