Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACKTT9_RS36775 Genome accession   NZ_AP038372
Coordinates   8373437..8374804 (-) Length   455 a.a.
NCBI ID   WP_157326762.1    Uniprot ID   A0A7W0I3B2
Organism   Paenibacillus sp. P36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8368437..8379804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTT9_RS36745 (PAENIP36_73000) ispF 8368490..8368975 (-) 486 WP_157326760.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACKTT9_RS36750 (PAENIP36_73010) ispD 8368972..8369676 (-) 705 WP_407869843.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACKTT9_RS36755 (PAENIP36_73020) - 8369774..8370841 (-) 1068 WP_127457561.1 PIN/TRAM domain-containing protein -
  ACKTT9_RS36760 (PAENIP36_73030) - 8370998..8371393 (+) 396 WP_127457569.1 DUF1573 domain-containing protein -
  ACKTT9_RS36765 (PAENIP36_73040) pssA 8371481..8372230 (-) 750 WP_127457562.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  ACKTT9_RS36770 (PAENIP36_73050) disA 8372317..8373396 (-) 1080 WP_407869844.1 DNA integrity scanning diadenylate cyclase DisA -
  ACKTT9_RS36775 (PAENIP36_73060) radA 8373437..8374804 (-) 1368 WP_157326762.1 DNA repair protein RadA Machinery gene
  ACKTT9_RS36780 (PAENIP36_73070) clpC 8374961..8377402 (-) 2442 WP_157326763.1 ATP-dependent protease ATP-binding subunit ClpC -
  ACKTT9_RS36785 (PAENIP36_73080) - 8377462..8378481 (-) 1020 WP_157326770.1 protein arginine kinase -
  ACKTT9_RS36790 (PAENIP36_73090) - 8378548..8379060 (-) 513 WP_127457567.1 UvrB/UvrC motif-containing protein -
  ACKTT9_RS36795 (PAENIP36_73100) - 8379074..8379535 (-) 462 WP_127457568.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49730.37 Da        Isoelectric Point: 6.8687

>NTDB_id=111041 ACKTT9_RS36775 WP_157326762.1 8373437..8374804(-) (radA) [Paenibacillus sp. P36]
MSKQKTKFCCQECGYESPKWMGKCPGCQSWNTMVEEVETVVRTKGMNSSAPRTKEKPTPIIHIESSPEPRVVTSNKELNR
VLGGGIVPGSLILVGGDPGIGKSTLLLQTSFELTQAHQKVLYISGEESVKQTKLRADRLNASSPLLYVLCETNLELIEEA
IQEIEPDFLVIDSIQTVFHPAITSAPGTVSQVRECTGHFMRIAKGKGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHSYRVLRAVKNRFGSTNEIGIFEMQEVGLVEVSNPSELFLSERPLGVAGSTVVASMEGTRPVLVEIQALVSSTNFPS
PRRMATGVDHNRLSLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAISIASSFRDHATRPFDVVFGEIGLTGE
VRGVSRIDQRVKEAEKLGFRRVIMPEKSLKGWTHPPGMEIIGVNTVSEALKAALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=111041 ACKTT9_RS36775 WP_157326762.1 8373437..8374804(-) (radA) [Paenibacillus sp. P36]
ATGAGTAAACAGAAGACGAAATTTTGCTGTCAAGAATGCGGGTATGAATCGCCAAAATGGATGGGCAAATGCCCAGGTTG
TCAGTCTTGGAATACGATGGTGGAAGAAGTTGAAACGGTCGTACGTACAAAGGGGATGAATTCTTCTGCCCCTCGCACGA
AAGAAAAACCCACCCCCATCATACATATAGAAAGTAGCCCAGAGCCTAGGGTTGTGACCAGCAACAAGGAATTGAATCGC
GTCTTAGGCGGAGGTATTGTGCCTGGATCTTTAATTCTCGTAGGTGGGGATCCGGGAATCGGGAAATCAACGTTACTGCT
CCAAACTTCTTTCGAGCTGACGCAAGCACATCAGAAGGTGCTTTATATATCGGGGGAAGAGTCCGTTAAACAGACGAAGC
TTCGTGCGGATCGCTTGAATGCCTCATCTCCGCTGCTGTATGTTCTTTGTGAAACGAACCTTGAGCTTATTGAAGAAGCC
ATTCAAGAAATTGAACCCGATTTCCTGGTGATTGACTCTATCCAGACTGTCTTCCACCCTGCTATCACATCGGCCCCGGG
CACCGTTTCGCAAGTTCGGGAATGCACGGGTCACTTTATGAGAATAGCTAAGGGGAAAGGGATTGCAACGGTCCTTGTCG
GCCATGTGACGAAGGAAGGCGCCATTGCGGGACCTAGGATGCTGGAGCACATGGTTGATTGTGTTCTTTACTTCGAAGGA
GAGCGGCACCATTCCTACCGCGTGCTCCGTGCAGTCAAGAATCGATTCGGGTCTACGAATGAGATCGGAATTTTTGAGAT
GCAGGAAGTAGGACTTGTCGAAGTGAGCAACCCCTCTGAACTGTTCTTGTCCGAGAGACCACTCGGTGTTGCCGGTTCCA
CCGTGGTTGCGAGTATGGAAGGAACGCGTCCGGTATTGGTAGAGATTCAGGCGTTGGTTTCTTCGACGAATTTCCCATCC
CCAAGAAGGATGGCGACTGGTGTCGATCACAACCGACTTTCTTTGATCATCGCCGTTTTAGAGAAACGCATGGGCATGTT
CTTGCAGAATCAGGATGCTTACCTGAACGTGGCTGGCGGCGTCAAGCTTGATGAGCCTGCTGTTGACTTAGCCATTGCGA
TTAGTATCGCATCCAGCTTCCGGGATCATGCAACGAGACCTTTTGATGTCGTGTTCGGTGAGATCGGGTTGACCGGTGAA
GTCCGTGGTGTGTCACGGATTGATCAGCGGGTAAAGGAAGCGGAGAAATTAGGATTCCGCAGAGTCATTATGCCAGAGAA
AAGTTTGAAGGGGTGGACGCATCCGCCCGGTATGGAGATTATTGGGGTGAACACGGTGTCAGAAGCATTGAAAGCGGCAC
TGGATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-220)

Subunit ChlI of Mg-chelatase (ChlI)

(345-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W0I3B2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.421

100

0.686
  radA Streptococcus pneumoniae Rx1

58.537

99.121

0.58
  radA Streptococcus pneumoniae D39

58.537

99.121

0.58
  radA Streptococcus pneumoniae R6

58.537

99.121

0.58
  radA Streptococcus pneumoniae TIGR4

58.537

99.121

0.58
  radA Streptococcus mitis NCTC 12261

58.537

99.121

0.58
  radA Streptococcus mitis SK321

58.537

99.121

0.58

Multiple sequence alignment