Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACOBWA_RS07940 Genome accession   NZ_CP184640
Coordinates   1762570..1763481 (-) Length   303 a.a.
NCBI ID   WP_227526712.1    Uniprot ID   -
Organism   Psychrobacter sp. ER1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1757570..1768481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOBWA_RS07915 (ACOBWA_07915) aroQ 1757976..1758512 (+) 537 WP_420228971.1 type II 3-dehydroquinate dehydratase -
  ACOBWA_RS07920 (ACOBWA_07920) - 1758635..1759936 (+) 1302 WP_420228972.1 ABC1 kinase family protein -
  ACOBWA_RS07925 (ACOBWA_07925) - 1759978..1760808 (-) 831 WP_057760421.1 ion transporter -
  ACOBWA_RS07930 (ACOBWA_07930) - 1761126..1761875 (+) 750 WP_420228973.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ACOBWA_RS07935 (ACOBWA_07935) - 1761949..1762515 (-) 567 WP_420228974.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  ACOBWA_RS07940 (ACOBWA_07940) pilA 1762570..1763481 (-) 912 WP_227526712.1 signal recognition particle-docking protein FtsY Machinery gene
  ACOBWA_RS07945 (ACOBWA_07945) - 1764256..1764405 (+) 150 WP_165598598.1 hypothetical protein -
  ACOBWA_RS07950 (ACOBWA_07950) - 1764471..1765967 (+) 1497 WP_420228975.1 M16 family metallopeptidase -
  ACOBWA_RS07955 (ACOBWA_07955) - 1766035..1767612 (+) 1578 WP_420228976.1 M16 family metallopeptidase -
  ACOBWA_RS07960 (ACOBWA_07960) - 1767761..1768336 (-) 576 WP_296206709.1 hypothetical protein -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 32598.45 Da        Isoelectric Point: 5.2445

>NTDB_id=1110392 ACOBWA_RS07940 WP_227526712.1 1762570..1763481(-) (pilA) [Psychrobacter sp. ER1]
MKTGLSKSRKNLAEGMVSILIGGKEIDDELLEEVEDQLLVADIGVNATNRIIKSLTEQTDRGDLIYAHSLYKALQSELVD
ILTPKVEPLVIDTSKKPFVILVVGVNGVGKTTTIGKLAKRLQGEGKSVMLAAGDTFRAAATEQLQIWGERNHIPVVAQGH
GSDSASVIFDAMQSAKAKNIDVLIADTAGRLQNKTHLMAELEKVVRVMRKADPSAPHEGMIVLDAGTGQNAINQVELFNK
VVPLTGITITKLDGTAKGGVVFNIAETTDVPIRYIGVGESIDDLRSFSPKQFVAALFETDDKE

Nucleotide


Download         Length: 912 bp        

>NTDB_id=1110392 ACOBWA_RS07940 WP_227526712.1 1762570..1763481(-) (pilA) [Psychrobacter sp. ER1]
ATGAAAACGGGCCTCAGTAAGTCACGCAAAAACTTAGCCGAAGGCATGGTCAGTATCTTAATCGGTGGCAAAGAGATTGA
TGACGAGCTCTTAGAAGAAGTCGAAGATCAGCTATTGGTAGCCGATATCGGCGTCAACGCGACGAACCGTATCATCAAGA
GCCTTACCGAGCAGACAGATCGTGGTGACTTGATTTATGCACACTCTCTATATAAAGCATTGCAAAGTGAGTTGGTTGAT
ATCCTCACACCAAAAGTTGAGCCATTGGTGATTGATACTAGCAAAAAGCCGTTTGTTATATTGGTAGTAGGTGTCAATGG
CGTAGGGAAAACCACAACGATTGGTAAGCTTGCCAAGCGTCTACAGGGTGAAGGTAAATCAGTTATGCTGGCAGCGGGTG
ATACGTTCCGTGCGGCAGCTACTGAGCAGCTACAGATTTGGGGCGAGCGTAATCATATTCCAGTGGTAGCGCAAGGTCAT
GGTTCTGACAGCGCTTCTGTCATTTTTGATGCGATGCAGTCAGCCAAAGCAAAAAATATCGATGTGCTCATTGCCGATAC
TGCGGGACGTCTGCAAAACAAAACGCATTTGATGGCAGAGTTAGAGAAGGTCGTACGTGTCATGCGTAAGGCGGATCCAA
GTGCTCCGCATGAAGGTATGATTGTGCTGGATGCTGGCACGGGTCAAAATGCTATCAACCAAGTCGAACTGTTTAATAAA
GTTGTGCCACTGACAGGTATTACTATTACTAAGCTAGACGGTACTGCTAAAGGTGGTGTGGTATTTAATATTGCCGAAAC
GACAGATGTGCCTATCCGCTATATCGGTGTGGGTGAGTCGATTGATGACTTGCGTTCTTTTAGTCCGAAACAATTTGTCG
CCGCTTTGTTCGAGACCGACGATAAAGAATAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(97-297)

SRP54-type protein, helical bundle domain (SRP54_N)

(18-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.013

98.35

0.512

Multiple sequence alignment