Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ACOCH5_RS09930 | Genome accession | NZ_CP184605 |
| Coordinates | 2096037..2096417 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain CQPMC-AB15 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2091037..2101417
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACOCH5_RS09900 (ACOCH5_09900) | kdsB | 2091940..2092701 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| ACOCH5_RS09905 (ACOCH5_09905) | - | 2092713..2093693 (+) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| ACOCH5_RS09910 (ACOCH5_09910) | - | 2093705..2094046 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ACOCH5_RS09915 (ACOCH5_09915) | - | 2094064..2094837 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| ACOCH5_RS09920 (ACOCH5_09920) | - | 2094875..2095483 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ACOCH5_RS09925 (ACOCH5_09925) | - | 2095493..2096047 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| ACOCH5_RS09930 (ACOCH5_09930) | xcpV | 2096037..2096417 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ACOCH5_RS09935 (ACOCH5_09935) | xcpW | 2096417..2097118 (+) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ACOCH5_RS09940 (ACOCH5_09940) | gspK | 2097118..2098077 (+) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| ACOCH5_RS09945 (ACOCH5_09945) | - | 2098308..2098904 (+) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| ACOCH5_RS09950 (ACOCH5_09950) | ung | 2098955..2099668 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ACOCH5_RS09955 (ACOCH5_09955) | - | 2099665..2100789 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ACOCH5_RS09960 (ACOCH5_09960) | tadA | 2100796..2101299 (+) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1110176 ACOCH5_RS09930 WP_000836911.1 2096037..2096417(+) (xcpV) [Acinetobacter baumannii strain CQPMC-AB15]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1110176 ACOCH5_RS09930 WP_000836911.1 2096037..2096417(+) (xcpV) [Acinetobacter baumannii strain CQPMC-AB15]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |