Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ACOCIH_RS01530 Genome accession   NZ_CP184601
Coordinates   325015..325833 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain CQPMC-AB17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 320015..330833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOCIH_RS01515 (ACOCIH_01515) pilE 320232..320657 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  ACOCIH_RS01520 (ACOCIH_01520) pilY2 320654..321136 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  ACOCIH_RS01525 (ACOCIH_01525) pilY1 321149..325003 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  ACOCIH_RS01530 (ACOCIH_01530) pilX 325015..325833 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACOCIH_RS01535 (ACOCIH_01535) pilW 325830..326831 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  ACOCIH_RS01540 (ACOCIH_01540) pilV 326832..327392 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  ACOCIH_RS01545 (ACOCIH_01545) fimU 327386..327859 (-) 474 WP_001214061.1 pilus assembly FimT family protein Machinery gene
  ACOCIH_RS01550 (ACOCIH_01550) ispH 328029..328979 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACOCIH_RS01555 (ACOCIH_01555) gmk 329102..329731 (+) 630 WP_000015937.1 guanylate kinase -
  ACOCIH_RS01560 (ACOCIH_01560) rpoZ 329804..330082 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACOCIH_RS01565 (ACOCIH_01565) - 330121..330250 (+) 130 Protein_301 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=1110063 ACOCIH_RS01530 WP_000149374.1 325015..325833(-) (pilX) [Acinetobacter baumannii strain CQPMC-AB17]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1110063 ACOCIH_RS01530 WP_000149374.1 325015..325833(-) (pilX) [Acinetobacter baumannii strain CQPMC-AB17]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment