Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ACOCH4_RS09945 | Genome accession | NZ_CP184597 |
| Coordinates | 2096043..2096423 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain CQPMC-AB19 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2091043..2101423
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACOCH4_RS09915 (ACOCH4_09915) | kdsB | 2091946..2092707 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| ACOCH4_RS09920 (ACOCH4_09920) | - | 2092719..2093699 (+) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| ACOCH4_RS09925 (ACOCH4_09925) | - | 2093711..2094052 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ACOCH4_RS09930 (ACOCH4_09930) | - | 2094070..2094843 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| ACOCH4_RS09935 (ACOCH4_09935) | - | 2094881..2095489 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ACOCH4_RS09940 (ACOCH4_09940) | - | 2095499..2096053 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| ACOCH4_RS09945 (ACOCH4_09945) | xcpV | 2096043..2096423 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ACOCH4_RS09950 (ACOCH4_09950) | xcpW | 2096423..2097124 (+) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ACOCH4_RS09955 (ACOCH4_09955) | gspK | 2097124..2098083 (+) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| ACOCH4_RS09960 (ACOCH4_09960) | - | 2098314..2098910 (+) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| ACOCH4_RS09965 (ACOCH4_09965) | ung | 2098961..2099674 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ACOCH4_RS09970 (ACOCH4_09970) | - | 2099671..2100795 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ACOCH4_RS09975 (ACOCH4_09975) | tadA | 2100802..2101305 (+) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1109988 ACOCH4_RS09945 WP_000836911.1 2096043..2096423(+) (xcpV) [Acinetobacter baumannii strain CQPMC-AB19]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1109988 ACOCH4_RS09945 WP_000836911.1 2096043..2096423(+) (xcpV) [Acinetobacter baumannii strain CQPMC-AB19]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |