Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   DP15_RS00210 Genome accession   NZ_CP008926
Coordinates   41381..42451 (-) Length   356 a.a.
NCBI ID   WP_038432344.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain ATCC 19615     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 36381..47451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP15_RS00190 (DP15_40) citX 36962..37540 (+) 579 WP_011054513.1 citrate lyase holo-[acyl-carrier protein] synthase -
  DP15_RS00195 (DP15_41) - 37555..38949 (+) 1395 WP_014635474.1 oxaloacetate decarboxylase subunit alpha -
  DP15_RS00200 (DP15_42) citC 39059..40111 (-) 1053 WP_002991776.1 [citrate (pro-3S)-lyase] ligase -
  DP15_RS00205 (DP15_43) - 40200..40682 (-) 483 WP_002984600.1 PASTA domain-containing protein -
  DP15_RS00210 (DP15_44) xerS 41381..42451 (-) 1071 WP_038432344.1 tyrosine recombinase XerS Machinery gene
  DP15_RS00215 (DP15_45) - 42922..43620 (+) 699 WP_038432346.1 helix-turn-helix transcriptional regulator -
  DP15_RS00220 (DP15_46) ffh 43755..45317 (-) 1563 WP_023610007.1 signal recognition particle protein -
  DP15_RS00225 (DP15_47) - 45332..45664 (-) 333 WP_002989745.1 putative DNA-binding protein -
  DP15_RS00230 (DP15_48) - 45762..46460 (-) 699 WP_002989743.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41499.62 Da        Isoelectric Point: 9.5552

>NTDB_id=110906 DP15_RS00210 WP_038432344.1 41381..42451(-) (xerS) [Streptococcus pyogenes strain ATCC 19615]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQVPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=110906 DP15_RS00210 WP_038432344.1 41381..42451(-) (xerS) [Streptococcus pyogenes strain ATCC 19615]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTACAAGGCTATCATGCCTTGGTATGTTTTAGATTATTATCAATC
CAAATTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGTGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(177-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803

Multiple sequence alignment