Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACOBRD_RS08470 Genome accession   NZ_CP184527
Coordinates   1754670..1756040 (-) Length   456 a.a.
NCBI ID   WP_002832361.1    Uniprot ID   A0AAN5Y9S9
Organism   Pediococcus acidilactici strain TL3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1749670..1761040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOBRD_RS08450 (ACOBRD_08455) - 1749813..1750226 (-) 414 WP_004165556.1 Mini-ribonuclease 3 -
  ACOBRD_RS08455 (ACOBRD_08460) cysS 1750219..1751637 (-) 1419 WP_053906350.1 cysteine--tRNA ligase -
  ACOBRD_RS08460 (ACOBRD_08465) gltX 1751794..1753281 (-) 1488 WP_002832359.1 glutamate--tRNA ligase -
  ACOBRD_RS08465 (ACOBRD_08470) - 1753406..1754554 (-) 1149 WP_002832360.1 PIN/TRAM domain-containing protein -
  ACOBRD_RS08470 (ACOBRD_08475) radA 1754670..1756040 (-) 1371 WP_002832361.1 DNA repair protein RadA Machinery gene
  ACOBRD_RS08475 (ACOBRD_08480) - 1756134..1756670 (-) 537 WP_002832362.1 dUTP diphosphatase -
  ACOBRD_RS08480 (ACOBRD_08485) - 1756799..1757122 (+) 324 WP_002832363.1 GNAT family N-acetyltransferase -
  ACOBRD_RS08485 (ACOBRD_08490) rpiA 1757133..1757819 (+) 687 WP_420222951.1 ribose-5-phosphate isomerase RpiA -
  ACOBRD_RS08490 (ACOBRD_08495) - 1757868..1759214 (+) 1347 WP_159214226.1 aminopeptidase C -
  ACOBRD_RS08495 (ACOBRD_08500) - 1759608..1760279 (-) 672 WP_002832370.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50252.79 Da        Isoelectric Point: 7.4153

>NTDB_id=1108954 ACOBRD_RS08470 WP_002832361.1 1754670..1756040(-) (radA) [Pediococcus acidilactici strain TL3]
MAKVKTQFVCNNCGYASPKFLGRCPNCGKWNTLVEERMSDPKAERKSRVSFDGKHTQPQLISDVAMHEEPRVKTGMEELN
RVLGGGVVDGSLVLIGGDPGIGKSTLLLQLSGQLAETQRKVLYVSGEESASQIKMRAERLKVNSERFYLYPETDMSSVRA
VIEELHPEYVIIDSVQTMQEPDIESAVGSVSQIREITAELMQIAKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMREEGLREVANPSEIFLEERLKDASGSAIVVSMEGTRPILVEIQALITPTIFG
NAQRTASGLDRNRVSLIMAVLEKRAKLTLQNQDAYLKAAGGVKLDEPAIDLALAISIVSSFKNQGTRPTDSFVGEIGLTG
EIRRVNRIEQRVAEAQKLGFKRILIPKNNLKGWQPPEGIEVVGVATIADAIRRAFN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1108954 ACOBRD_RS08470 WP_002832361.1 1754670..1756040(-) (radA) [Pediococcus acidilactici strain TL3]
ATGGCAAAAGTTAAGACCCAGTTTGTATGCAATAATTGCGGATACGCCTCCCCTAAATTTTTAGGACGCTGTCCCAATTG
TGGTAAGTGGAACACTTTAGTTGAAGAACGGATGAGCGACCCAAAGGCCGAACGAAAAAGTCGGGTGAGCTTTGATGGCA
AACATACGCAACCACAGTTGATTTCGGATGTCGCGATGCACGAGGAGCCCCGGGTAAAGACCGGGATGGAAGAACTTAAC
CGCGTGCTTGGTGGCGGGGTGGTTGACGGCTCCCTAGTCTTAATTGGTGGGGATCCTGGAATCGGAAAATCAACCCTGTT
GTTACAGCTATCAGGACAGTTGGCAGAGACGCAACGCAAAGTACTTTACGTTTCGGGTGAAGAAAGTGCTTCCCAGATTA
AGATGCGTGCCGAACGCTTGAAAGTTAATAGTGAGCGCTTCTATTTGTATCCAGAGACGGATATGTCTAGCGTTCGGGCT
GTGATTGAGGAGTTACACCCCGAATACGTGATCATTGATTCGGTTCAGACCATGCAGGAACCGGATATTGAATCGGCAGT
GGGGAGCGTTTCTCAAATTCGAGAAATTACCGCAGAATTAATGCAAATCGCGAAAACCAATAACATTACCATCTTCATCG
TTGGTCACGTGACCAAGGGCGGCGCAATTGCGGGGCCGAAGATTTTGGAACACATGGTGGATACGGTGCTTTACTTTGAA
GGGGATTTGCACCACACTTACCGGATCCTGCGGGCGGTGAAGAACCGCTTTGGTTCCACGAACGAATTAGGAATCTTTGA
GATGCGTGAAGAAGGGTTACGCGAAGTGGCTAACCCGTCAGAAATTTTCTTAGAAGAGCGTTTAAAAGATGCTTCGGGAT
CGGCAATTGTAGTTTCAATGGAAGGAACTCGGCCGATTTTAGTTGAAATACAAGCCTTGATCACGCCCACCATCTTCGGC
AATGCGCAGCGCACGGCGAGCGGGTTAGACCGCAACCGAGTTTCGCTGATCATGGCGGTGCTCGAAAAACGGGCAAAGCT
TACTTTGCAAAACCAAGACGCCTATTTAAAGGCGGCGGGCGGCGTCAAGCTTGACGAACCCGCAATTGACTTAGCGTTGG
CGATTAGTATTGTTTCAAGTTTTAAAAATCAGGGAACCCGGCCGACCGATAGTTTTGTTGGTGAAATCGGCTTAACTGGT
GAAATTCGGCGGGTTAACCGAATTGAACAACGGGTCGCTGAAGCACAAAAGCTTGGTTTTAAGCGGATTTTGATTCCAAA
GAATAATTTAAAGGGGTGGCAGCCCCCCGAAGGAATTGAAGTTGTAGGGGTAGCTACGATTGCCGACGCGATTCGGCGGG
CATTTAATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

67.033

99.781

0.669
  radA Streptococcus mitis NCTC 12261

66.813

99.781

0.667
  radA Streptococcus pneumoniae Rx1

66.813

99.781

0.667
  radA Streptococcus pneumoniae TIGR4

66.813

99.781

0.667
  radA Streptococcus pneumoniae D39

66.813

99.781

0.667
  radA Streptococcus pneumoniae R6

66.813

99.781

0.667
  radA Bacillus subtilis subsp. subtilis str. 168

65.351

100

0.654

Multiple sequence alignment