Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACKTSO_RS03470 Genome accession   NZ_AP035889
Coordinates   704216..705169 (+) Length   317 a.a.
NCBI ID   WP_026210961.1    Uniprot ID   -
Organism   Gallibacterium anatis strain SMUHGa01     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 699216..710169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTSO_RS03445 (SMUG_06580) - 699703..700644 (+) 942 WP_013745084.1 ABC transporter ATP-binding protein -
  ACKTSO_RS03450 (SMUG_06590) - 700645..701415 (+) 771 WP_407902869.1 ABC transporter permease -
  ACKTSO_RS03455 (SMUG_06600) modB 701441..702157 (+) 717 WP_013745082.1 molybdate ABC transporter permease subunit -
  ACKTSO_RS03460 (SMUG_06610) modC 702150..703205 (+) 1056 WP_407902870.1 molybdenum ABC transporter ATP-binding protein -
  ACKTSO_RS03465 (SMUG_06620) modA 703250..704008 (+) 759 WP_021462204.1 molybdate ABC transporter substrate-binding protein -
  ACKTSO_RS03470 (SMUG_06630) ceuB 704216..705169 (+) 954 WP_026210961.1 ABC transporter permease Machinery gene
  ACKTSO_RS03475 (SMUG_06640) - 705162..706127 (+) 966 WP_407902871.1 iron chelate uptake ABC transporter family permease subunit -
  ACKTSO_RS03480 (SMUG_06650) - 706118..706879 (+) 762 WP_013745077.1 ABC transporter ATP-binding protein -
  ACKTSO_RS03485 (SMUG_06660) - 706910..707818 (+) 909 WP_407902872.1 siderophore ABC transporter substrate-binding protein -
  ACKTSO_RS03490 (SMUG_06670) - 707933..709855 (+) 1923 WP_039153509.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34688.73 Da        Isoelectric Point: 8.9889

>NTDB_id=110892 ACKTSO_RS03470 WP_026210961.1 704216..705169(+) (ceuB) [Gallibacterium anatis strain SMUHGa01]
MIQRRYLLLLLAVLSITSLLIGVSSVSISGLLQFDAEQWQILLISRIPRLVSILIAGAGLSICGLIMQQLSRNRFVSPTT
AGTMDCARLGVLLAILCFPDASMLLKSAIAIIAAFAGSLLFMTLLSKLKFTDVIFVPLVGIMFGNIISSMTAFIAYQQDL
LQNLSAWLQGDFSLIMSGRYEMLYISIPTLLFAYIYAQRFSIVGMGEEFATNLGLNYKQVLYLGLAIVSIVSAIVIVTVG
VIPFLGLIIPNIVALYLGDNLRNTLSHTALLGAIFVLFCDILGRIVIYPYEISINAVVGVFGSAIFLYLLFKRYRNA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=110892 ACKTSO_RS03470 WP_026210961.1 704216..705169(+) (ceuB) [Gallibacterium anatis strain SMUHGa01]
ATGATTCAACGACGATATCTGTTGTTATTATTGGCGGTATTATCAATTACTTCTTTATTAATCGGTGTGAGTTCCGTCTC
TATTAGCGGTCTACTACAATTTGATGCCGAACAGTGGCAAATTTTATTGATCAGCCGTATTCCTCGTTTAGTGAGCATTT
TGATTGCCGGTGCCGGTTTAAGTATTTGTGGCTTAATTATGCAACAACTTAGTCGTAATCGCTTTGTTTCGCCAACCACC
GCCGGAACGATGGATTGTGCGCGATTAGGTGTGTTATTAGCTATTCTTTGCTTTCCTGATGCTTCAATGTTATTAAAATC
GGCTATTGCAATTATTGCCGCATTTGCCGGTTCATTGTTATTTATGACTTTATTGTCAAAACTAAAATTTACCGATGTTA
TTTTTGTGCCGCTAGTTGGCATTATGTTTGGCAATATTATTAGTTCTATGACCGCTTTTATCGCCTATCAACAAGATTTA
TTACAAAATTTATCTGCTTGGTTGCAAGGTGATTTTTCGTTAATTATGAGTGGACGCTATGAGATGCTTTATATCAGCAT
CCCAACATTATTATTTGCATATATTTATGCACAACGTTTTTCTATTGTCGGGATGGGAGAAGAATTTGCCACCAACCTAG
GATTAAATTATAAGCAGGTACTTTATTTAGGATTAGCCATTGTTTCGATTGTGTCCGCCATTGTTATTGTTACCGTAGGC
GTTATTCCTTTTTTAGGACTAATTATCCCAAATATTGTCGCTTTATATTTAGGAGATAACTTACGCAATACTTTGTCGCA
TACAGCATTATTAGGTGCTATTTTTGTATTATTTTGCGATATTCTTGGACGCATTGTGATTTATCCTTATGAAATTTCGA
TTAATGCAGTAGTTGGCGTTTTTGGTAGTGCTATTTTCCTCTATTTATTATTTAAAAGGTATCGTAATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.074

97.476

0.517

Multiple sequence alignment