Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   ID09_RS05965 Genome accession   NZ_CP008921
Coordinates   1220800..1221282 (+) Length   160 a.a.
NCBI ID   WP_024381385.1    Uniprot ID   -
Organism   Streptococcus suis 6407     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1215800..1226282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS05940 (ID09_06110) - 1217048..1218358 (-) 1311 WP_024381382.1 GntP family permease -
  ID09_RS05945 (ID09_06115) folK 1218409..1218897 (-) 489 WP_024381383.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ID09_RS05950 (ID09_06120) folB 1218894..1219256 (-) 363 WP_002938086.1 dihydroneopterin aldolase -
  ID09_RS05955 (ID09_06125) folP 1219249..1220061 (-) 813 WP_024381384.1 dihydropteroate synthase -
  ID09_RS05960 (ID09_06130) folE 1220070..1220633 (-) 564 WP_002938082.1 GTP cyclohydrolase I FolE -
  ID09_RS05965 (ID09_06135) mutX 1220800..1221282 (+) 483 WP_024381385.1 NUDIX hydrolase Machinery gene
  ID09_RS05970 (ID09_06140) - 1221331..1222008 (-) 678 WP_002938079.1 DUF4956 domain-containing protein -
  ID09_RS05975 (ID09_06145) - 1221995..1222738 (-) 744 WP_012027116.1 polyphosphate polymerase domain-containing protein -
  ID09_RS05980 (ID09_06150) - 1222931..1223233 (+) 303 WP_002938072.1 hypothetical protein -
  ID09_RS05985 (ID09_06155) - 1223254..1223520 (-) 267 WP_012775169.1 DUF2087 domain-containing protein -
  ID09_RS05990 (ID09_06160) pheT 1223575..1225974 (-) 2400 WP_024381386.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18540.89 Da        Isoelectric Point: 4.4960

>NTDB_id=110866 ID09_RS05965 WP_024381385.1 1220800..1221282(+) (mutX) [Streptococcus suis 6407]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREVFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGDKLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=110866 ID09_RS05965 WP_024381385.1 1220800..1221282(+) (mutX) [Streptococcus suis 6407]
ATGACCAAGAAACCCGTCCAACTCGCTACGATTTGCTACATTGATAATGGCAAGGAATTTCTTCTCCTTCATCGAAACAA
GAAAGAAAACGATGTCCATCAAGGAAAATGGATTGGGGTCGGTGGCAAGCTGGAACCTGGCGAAACACCACAGGCTTGCG
CTATTCGTGAAGTCTTTGAGGAAACTGGGCTTACTGTAACAAAGCATGCTCTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACAGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTCTTATTGACTGCAATGAAGGTGA
CTTAGAGTGGGTTCCCTATGACCAAGTCTTGTCCAAACCAACTTGGGAGGGCGACCGGCATTTTCAAGAATGGCTATTAG
AGGACAAACCATTTTTTTCCGCTTGCTTCCGCTATGATGGGGACAAACTGCTTGATTACAGTGTTGATTTTTATGAAGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

81.046

95.625

0.775

Multiple sequence alignment