Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ID09_RS04510 Genome accession   NZ_CP008921
Coordinates   926215..927984 (+) Length   589 a.a.
NCBI ID   WP_024381804.1    Uniprot ID   -
Organism   Streptococcus suis 6407     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 921215..932984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS04480 (ID09_04600) - 922026..922781 (+) 756 WP_024381800.1 class I SAM-dependent methyltransferase -
  ID09_RS04485 (ID09_04605) pcp 922778..923425 (+) 648 WP_024381801.1 pyroglutamyl-peptidase I -
  ID09_RS04490 (ID09_04610) - 923425..923733 (+) 309 WP_024381802.1 DUF4298 domain-containing protein -
  ID09_RS04495 (ID09_04615) rpsP 923858..924130 (+) 273 WP_002940682.1 30S ribosomal protein S16 -
  ID09_RS04500 (ID09_04620) - 924152..924394 (+) 243 WP_012028079.1 KH domain-containing protein -
  ID09_RS04505 (ID09_04625) rcrP 924470..926206 (+) 1737 WP_024381803.1 ABC transporter ATP-binding protein Regulator
  ID09_RS04510 (ID09_04630) rcrQ 926215..927984 (+) 1770 WP_024381804.1 ABC transporter ATP-binding protein Regulator
  ID09_RS04515 (ID09_04635) - 928041..928964 (-) 924 WP_024381805.1 polysaccharide deacetylase family protein -
  ID09_RS04520 (ID09_04640) - 929069..930355 (+) 1287 WP_024381806.1 homoserine dehydrogenase -
  ID09_RS04525 (ID09_04645) thrB 930359..931219 (+) 861 WP_024381807.1 homoserine kinase -
  ID09_RS04530 (ID09_04655) murB 931453..932361 (+) 909 WP_002938670.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65843.78 Da        Isoelectric Point: 5.2701

>NTDB_id=110854 ID09_RS04510 WP_024381804.1 926215..927984(+) (rcrQ) [Streptococcus suis 6407]
MKNRSVFTRVWDYLRRYQSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGAQINYSYIAIILAIYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVITLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGFSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTESLTGQVSFEQVEFGYSEDKPLIRNFNLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=110854 ID09_RS04510 WP_024381804.1 926215..927984(+) (rcrQ) [Streptococcus suis 6407]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACCAATCTTCTGTATTTTTAGCCGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTAGAACCCTTTGTGCTGGGGCTTATCATTACAGAATTGACCAAGAATTTGT
TGGATATTGCTAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATACTTGCCATCTATGCCCTTCGC
GCCCTTCTATATGAAATCGGTGCCTACGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACTAAGGAACTACG
TCAGGATTTGAGCCACAAAATTAACAAGATTCCAGTATCTTATTTTGACAAGCACCAGTATGGTGATTTACTCGGACGTT
TTACAAGCGATGTGGAGACTGTTTCAAACGCCCTGCAACAAAGTTTTCTCCAGCTAGTCAATGCCGTTCTGACCCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCATAACCTTGGTTCCAGTGACCTATTTTGG
TTCTAAGTTTGTCATGGGCAAATCCCAGCCATATTTCAAGCAGCAGGCTGATGCCCTAGGTCGTTTGAACGGCTTTGTCC
AAGAAAATCTGACTGGTTTTAACGTTCTCAAACTCTACGGCCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATTACC
GCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTCATGTCTGGTTTGCTCATGCCTCTAGTTCACGGCTTCTCAAACAT
CGCCTACGTTGTCGTCGCCCTGCTATCTGGATTGAAAGTTCTTGCAGGTACATTGACGGTGGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAATTGGCACCACAGTTGCAGTCTGCCAAATCTTCC
CTTGAACGCATCTTTTCAGTCCTAGATGAGCTTGATGAAGAAGACGCCAATGCGCTGGAGTTGACAGAAAGTCTGACAGG
ACAAGTCAGCTTTGAACAGGTCGAATTTGGCTATTCAGAAGACAAGCCGCTTATCCGTAACTTTAATCTTGATGTTAAGC
CAGGTGAAATGGTTGCTATCGTTGGACCAACGGGGGCAGGTAAGACAACCCTTATCAACTTGCTCATGCGTTTCTATGAT
GTCACATCAGGTGCTATCAAGGTAGATGGGCAGGATATTCGAAATCTTTCACGTCAATCCTACCGTAGTCAATTTGGTAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAACCTACGTTTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAGGCTGCTAAAGCTGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCACGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAGGCCATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTATAATCTGTATCAAAGTCAGTTTAGTGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.729

100

0.438