Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ID09_RS04505 Genome accession   NZ_CP008921
Coordinates   924470..926206 (+) Length   578 a.a.
NCBI ID   WP_024381803.1    Uniprot ID   -
Organism   Streptococcus suis 6407     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 919470..931206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS04480 (ID09_04600) - 922026..922781 (+) 756 WP_024381800.1 class I SAM-dependent methyltransferase -
  ID09_RS04485 (ID09_04605) pcp 922778..923425 (+) 648 WP_024381801.1 pyroglutamyl-peptidase I -
  ID09_RS04490 (ID09_04610) - 923425..923733 (+) 309 WP_024381802.1 DUF4298 domain-containing protein -
  ID09_RS04495 (ID09_04615) rpsP 923858..924130 (+) 273 WP_002940682.1 30S ribosomal protein S16 -
  ID09_RS04500 (ID09_04620) - 924152..924394 (+) 243 WP_012028079.1 KH domain-containing protein -
  ID09_RS04505 (ID09_04625) rcrP 924470..926206 (+) 1737 WP_024381803.1 ABC transporter ATP-binding protein Regulator
  ID09_RS04510 (ID09_04630) rcrQ 926215..927984 (+) 1770 WP_024381804.1 ABC transporter ATP-binding protein Regulator
  ID09_RS04515 (ID09_04635) - 928041..928964 (-) 924 WP_024381805.1 polysaccharide deacetylase family protein -
  ID09_RS04520 (ID09_04640) - 929069..930355 (+) 1287 WP_024381806.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65109.60 Da        Isoelectric Point: 6.2102

>NTDB_id=110853 ID09_RS04505 WP_024381803.1 924470..926206(+) (rcrP) [Streptococcus suis 6407]
MNLIWTYLKKYPKWIALDLLGASLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTRKEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALDPLKTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQKVLDMPISISKNE
EGITKSDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVMENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=110853 ID09_RS04505 WP_024381803.1 924470..926206(+) (rcrP) [Streptococcus suis 6407]
ATGAATCTGATTTGGACCTATTTGAAAAAATATCCTAAGTGGATTGCATTGGACTTGTTGGGAGCCTCCTTATTTGTAGT
GGTAAACTTGGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGATTAATTGTCCTGCTCGGGATTGTTGGTCGAGTGACACTTGCCTATGCAGCTGGAAAATTG
ACTACCAATATCGTCAAAGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTATTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTTCTCATGCAATTCTCTGAAATGGTCTTGAAACTAG
GTATTATTACACCCTTGATGATGATTGCTTCTGTCATTATGACCTTGGTAACCAGTCCGAGCTTGGCCTGGACAGTAGCA
GTAGCCATGCCTTTTCTAGTTTTTGTTATTTTCTATGTGGCAACCAAAACTCGTCCTCTTTCTGAAAAGCAACAAAAACG
TTTGGACACGATCAACCAATATGTTCGTGAAAATCTCATGGGCTTGCGTGTCATTCGTGCCTTTACTCGTAAGGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAGGAATATACCGATATTTCCAAAAAGCTCTTTAATCTGACTGGATTGACAGAG
CCTCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCCATTGTCTGGTTTGCTTTGGATCCCTTGAAAACAGGCAGTCT
ACAAATCGGTGATTTAGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCTTTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCGGTATCGAGCCAACGAATTCAGAAAGTCTTGGACATGCCCATTTCCATTTCTAAGAATGAA
GAAGGTATTACTAAATCAGATACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTTCTCCACAATATTTCATTTAAGGCTAAGCCTGGTGAAACGATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGATGGTGTGGATGTCAGACGC
TACAATCTGAAGGCACTCCGCAGCAAGATTGGCTTTATTCCACAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCTGAACTTCATGATGCGACAGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCACTTGGCTGAGGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCACGTGCTATTGTCAAGCAGCCGGATATTTACATTTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
GATTTTGAGGAGTCGTTTGAAGGAAGTGATGGAAAATGCGACGGTGCTAATTGTGGCTCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATCGTTGGCCGCGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTACCGAGAAATTGCCAACTCTCAACTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(27-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.265

100

0.389

Multiple sequence alignment