Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACN079_RS28175 Genome accession   NZ_CP184478
Coordinates   6264195..6265562 (+) Length   455 a.a.
NCBI ID   WP_030140305.1    Uniprot ID   A0A0B1YXD7
Organism   Pseudomonas sp. ABY48     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6259195..6270562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN079_RS28150 (ACN079_28150) - 6259321..6260034 (-) 714 WP_420232761.1 autoinducer binding domain-containing protein -
  ACN079_RS28155 (ACN079_28155) - 6260325..6261101 (+) 777 WP_420232762.1 ferredoxin--NADP reductase -
  ACN079_RS28160 (ACN079_28160) mscL 6261277..6261690 (-) 414 WP_420232763.1 large-conductance mechanosensitive channel protein MscL -
  ACN079_RS28165 (ACN079_28165) katB 6261973..6263514 (+) 1542 WP_420232764.1 catalase KatB -
  ACN079_RS28170 (ACN079_28170) - 6263605..6264153 (+) 549 WP_420235493.1 ankyrin repeat domain-containing protein -
  ACN079_RS28175 (ACN079_28175) radA 6264195..6265562 (+) 1368 WP_030140305.1 DNA repair protein RadA Machinery gene
  ACN079_RS28180 (ACN079_28180) - 6265705..6266073 (-) 369 WP_420232765.1 PilZ domain-containing protein -
  ACN079_RS28185 (ACN079_28185) - 6266234..6266311 (+) 78 Protein_5580 carbon starvation protein CstA -
  ACN079_RS28190 (ACN079_28190) - 6266338..6267834 (-) 1497 WP_420232766.1 cytochrome D1 domain-containing protein -
  ACN079_RS28195 (ACN079_28195) cobA 6267831..6268673 (-) 843 WP_420232767.1 uroporphyrinogen-III C-methyltransferase -
  ACN079_RS28200 (ACN079_28200) nirJ 6268714..6269892 (-) 1179 WP_420232768.1 heme d1 biosynthesis radical SAM protein NirJ -
  ACN079_RS28205 (ACN079_28205) - 6269966..6270535 (-) 570 WP_420232769.1 Lrp/AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48774.24 Da        Isoelectric Point: 6.8987

>NTDB_id=1108437 ACN079_RS28175 WP_030140305.1 6264195..6265562(+) (radA) [Pseudomonas sp. ABY48]
MAKAKRMYGCTECGSTFPKWAGQCSECGAWNTLTETMVESGGAAAPTGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1108437 ACN079_RS28175 WP_030140305.1 6264195..6265562(+) (radA) [Pseudomonas sp. ABY48]
ATGGCCAAGGCAAAGCGCATGTACGGCTGCACCGAGTGCGGCTCGACCTTTCCCAAATGGGCCGGCCAGTGCAGCGAATG
CGGGGCCTGGAACACCCTGACCGAAACCATGGTGGAAAGCGGCGGTGCGGCGGCGCCCACCGGTCGCACGGGCTGGGCCG
GTCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAAATTCCGCGTTTTTCCACCGCATCCGGTGAACTG
GACCGCGTGCTGGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATTGGCGGCGATCCGGGCATTGGCAAATCCACCAT
CCTGTTGCAAACCTTGTGCAACCTCGCCACCCGCATGCCGGCGCTGTATGTCACAGGCGAAGAATCCCAGCAGCAGGTCG
CCATGCGAGCCCGGCGCCTGGGCTTGCCCCAGGACCAGTTGCGGGTCATGACCGAAACCTGCATCGAAACCATCATCGCC
ACGGCGCGCCTGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACCATTTTCACTGAACAGCTGCAATCGGCTCC
GGGCGGCGTGTCCCAGGTGCGCGAAAGCGCGGCGTTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATTTTCCTGG
TGGGCCACGTCACCAAGGAAGGCGCGCTGGCGGGGCCGCGCGTGCTGGAGCACATGGTCGATACCGTGTTGTATTTCGAA
GGCGAATCCGATGGTCGCCTGCGTTTGCTGCGGGCGGTGAAGAACCGCTTCGGTGCCGTCAACGAACTGGGTGTGTTCGG
CATGACTGACAGAGGCTTGAAAGAAGTCTCAAACCCTTCGGCGATCTTTCTGACGCGAGCCCAGGAAGAAGTCCCCGGTA
GCGTGGTCATGGCAACGTGGGAAGGCACCCGTCCGATGTTGGTCGAGGTGCAAGCGCTGGTGGACGACAGCCACCTGGCG
AACCCGCGCCGTGTCACCCTGGGCCTGGATCAGAACCGACTGGCCATGTTGCTGGCGGTGTTGCATCGACACGGCGGGAT
TCCGACTCACGACCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCTTCCGACCTGGCGTTGA
TGGCTGCGGTCATGTCCAGCCTGCGCAACCGGCCGCTGCCTCACGATCTGTTGGTGTTCGGCGAAGTGGGGTTGTCGGGT
GAAGTGCGACCGGTGCCCAGCGGGCAGGAGCGGCTCAAGGAAGCGGCCAAGCACGGTTTCAAACGCGCCATCGTGCCCAA
GGGCAACGCGCCGAAGGAAGCACCGGCGGGGTTGCAGATCATTGCCGTGACACGCCTGGAACAGGCGTTGGATGCTTTGT
TCGAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B1YXD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus mitis NCTC 12261

46.087

100

0.466
  radA Streptococcus mitis SK321

46.272

100

0.464

Multiple sequence alignment