Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ID09_RS02175 Genome accession   NZ_CP008921
Coordinates   426027..426803 (+) Length   258 a.a.
NCBI ID   WP_024381507.1    Uniprot ID   -
Organism   Streptococcus suis 6407     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 421027..431803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS12275 - 424149..424352 (-) 204 Protein_376 transposase -
  ID09_RS02170 (ID09_02195) rlmD 424637..425989 (-) 1353 WP_024381506.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  ID09_RS02175 (ID09_02200) recX 426027..426803 (+) 777 WP_024381507.1 recombination regulator RecX Regulator
  ID09_RS02180 (ID09_02205) - 426879..427412 (+) 534 WP_004194106.1 DUF402 domain-containing protein -
  ID09_RS02185 (ID09_02210) - 427470..427787 (+) 318 WP_004194104.1 DUF960 domain-containing protein -
  ID09_RS02190 (ID09_02215) - 427887..428618 (+) 732 WP_014735520.1 GntR family transcriptional regulator -
  ID09_RS02195 (ID09_02220) - 428758..429468 (-) 711 WP_024381508.1 GntR family transcriptional regulator -
  ID09_RS02200 (ID09_02225) - 429675..431447 (+) 1773 WP_011922008.1 glycoside hydrolase family 35 protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 30384.92 Da        Isoelectric Point: 9.3979

>NTDB_id=110839 ID09_RS02175 WP_024381507.1 426027..426803(+) (recX) [Streptococcus suis 6407]
MRITKIEKKKRLYLLEVDGQDSLYITEDTIVRFMLSKGKEITEQEFRELRDFAQFSYGKNLALYYLSFKQRTKKEVSDYL
KKYEIEENNIVKIVTVLQEEKWLDDGNYVDSYVRQNALNGDKGPAMIRQKLMQKGIPKPLIDKRLAEEDFSELAGKIGEK
LVGRYQRKLPLRGLQDKVVQGLMGKGFSYETAKQSLGQLELVADEENEDDLIAKELDKQYRKYSRKYEGYELKQRLIQAL
ARKGYDFDRIQAVLRDYL

Nucleotide


Download         Length: 777 bp        

>NTDB_id=110839 ID09_RS02175 WP_024381507.1 426027..426803(+) (recX) [Streptococcus suis 6407]
ATGAGAATTACAAAAATTGAAAAGAAGAAACGTCTTTATTTACTTGAAGTGGATGGTCAGGATAGTTTATATATTACGGA
AGACACAATTGTTCGCTTCATGCTTAGTAAGGGAAAGGAAATCACGGAGCAGGAGTTTCGTGAGCTTCGCGATTTTGCTC
AGTTTTCTTATGGGAAAAATCTAGCACTTTATTACCTTTCCTTCAAGCAACGTACCAAAAAAGAAGTTAGTGATTATCTA
AAAAAATATGAAATTGAAGAAAACAATATTGTCAAGATTGTGACGGTATTACAAGAGGAAAAATGGCTGGACGATGGGAA
TTATGTTGATAGCTATGTTCGTCAGAATGCTCTAAATGGAGATAAGGGACCAGCTATGATTCGGCAGAAGTTGATGCAGA
AAGGAATTCCTAAACCGCTGATTGATAAAAGGCTGGCAGAGGAAGATTTTTCAGAGCTTGCTGGGAAGATTGGGGAGAAA
TTGGTGGGTAGATACCAAAGAAAATTGCCTCTTCGAGGTTTGCAAGATAAAGTTGTACAGGGATTGATGGGTAAAGGGTT
TTCTTATGAGACGGCCAAACAAAGCCTGGGTCAGTTGGAACTTGTGGCTGATGAGGAAAATGAAGATGATTTAATCGCCA
AGGAATTGGATAAGCAGTATAGAAAATATAGCCGTAAATATGAAGGCTACGAATTGAAGCAAAGGTTGATACAGGCTTTA
GCTCGAAAGGGTTATGACTTTGATCGGATTCAGGCTGTCCTTCGTGATTATCTGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(80-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

35.581

100

0.368